Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P13
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.079
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 31/129 (24%), Positives = 37/129 (28%), Gaps = 5/129 (3%)
 Frame = +3

Query: 576  AXKXPXPVKRPXXXXXXI----GSXPLTSXXKXXX-PXPGVAXPRXXFPGXXXXPPXNPP 740
            A   P PV  P      I    G+ P+ +       P P VA P    P     P   P 
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118

Query: 741  XXPPXXXXXLXAFPXPPXRXXPXXGXAXAPXPXXPPLXGFXXXPXXXXSSPXPGXCXXXN 920
              PP     + A P P     P         P  P   G    P    ++P         
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178

Query: 921  PPXXXPRPG 947
            PP   P  G
Sbjct: 1179 PPVPKPAAG 1187



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 17/69 (24%), Positives = 18/69 (26%)
 Frame = +3

Query: 639  PLTSXXKXXXPXPGVAXPRXXFPGXXXXPPXNPPXXPPXXXXXLXAFPXPPXRXXPXXGX 818
            P  S      P P    P    P     P   P   PP     +   P PP    P    
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221

Query: 819  AXAPXPXXP 845
              A  P  P
Sbjct: 1222 PSAGLPPVP 1230


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +3

Query: 780 PXPPXRXXPXXGXAXAPXPXXPPLXGFXXXPXXXXSSPXPGXCXXXNPPXXXPRPGAXXX 959
           P PP    P    A  P P   P+ G    P      P PG      PP   P P     
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-----PPPPGVAGAGPPPPPPPPPAVSAG 788

Query: 960 G 962
           G
Sbjct: 789 G 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 723 PPXNPPXXPPXXXXXLXAFPXPPXRXXPXXGXAXAPXPXXPP 848
           PP  P   PP     L A P PP    P  G   +P P  PP
Sbjct: 233 PPSIPSSRPPERVPSLSA-PAPPPIPPPSNGTVSSP-PNSPP 272


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 723 PPXNPPXXPPXXXXXLXAFPXPP 791
           PP NPP  PP       + P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,366
Number of Sequences: 5004
Number of extensions: 20377
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)