Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P11
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 33 0.072
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 30 0.38
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 27 2.7
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 27 4.7
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 27 4.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 6.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 6.2
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 26 8.2
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 8.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 8.2
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 32.7 bits (71), Expect = 0.072
Identities = 39/198 (19%), Positives = 81/198 (40%)
Frame = +1
Query: 268 STEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPR 447
+ E+EL E K + N + L + + +++ + + +E+ +Q
Sbjct: 27 TNEKELFEQAKRCLNICCGSNNFAKRNDVLFSLLDVAVSISSLELRKELISELYVPVQSL 86
Query: 448 VISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLY 627
+ E + S LA IYE QN++ + L + + G + ++ L +++ Y
Sbjct: 87 EEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVE-KHGHFENDLEQLLLLRIRLGDAY 145
Query: 628 LEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARV*IIEGNSSKRLKGTMNCHIVT 807
L++ +A V + L + +N+QL + ++C AR G + K C+
Sbjct: 146 LKLGKAEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAK----CYYRV 201
Query: 808 LSTKTSGMTCLRNALICT 861
L K G + +C+
Sbjct: 202 LQYKVPGNELIYRENLCS 219
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 30.3 bits (65), Expect = 0.38
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Frame = +1
Query: 202 NSGGLHKDQAEKYR---NVLMEILKSTEQELS-----ESLKAFIEAIVNENVSLVIS--- 348
NSG +H +Q E+Y N+ +++L+ T+ S S+K +N V L I
Sbjct: 697 NSGTMHMEQLERYHASANIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSG 756
Query: 349 --RQLLTDVSTHLALLADNVSQE 411
R L T +S +LL D++SQ+
Sbjct: 757 IHRSLGTHISKTRSLLLDSLSQQ 779
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 310 EAIVNENV-SLVISRQLLTDVSTHLALL-ADNVSQEVSHFALDVIQPRVISFEEQ 468
E+I+NE V I+ +L + +T+ A++ +N S + H ALD+IQ R+ EE+
Sbjct: 422 ESIMNEAVCDQKITIRLPINSNTNEAVVECENKSMQSKH-ALDIIQERIKDLEEK 475
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = +3
Query: 660 IRQQSLIATGRNNQRATADILQSLLCKSLDYRRKFIEAAQRYNELSYRNIIHEDERDDVP 839
I + +L+ N A + S+ K +Y+RK E + +++ HE E D
Sbjct: 94 ILRANLLKQSEANNAALESLNNSIKQKQDEYQRKLEELKKEIEYAKTKSLFHEREAQDAI 153
Query: 840 QECPYMHR 863
+ M R
Sbjct: 154 ETMKKMKR 161
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 617 PDCTLKWTIRCKLRHSSTEPHCYRPKQP-TSNCRYITKFAMQEFRL*KEIHRSGS 778
P+ K R K S+ + RP + C Y +K+A Q + K + RSGS
Sbjct: 657 PEIEFKAAFREKFLQSNEKVPFPRPGEIYEKRCDYFSKYACQNIFISKPLKRSGS 711
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 4.7
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +1
Query: 310 EAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFA---LDVIQPRVISFEEQVASI 480
E + +ENV V++ L T L LLA +E+ +++IQ +FE+ V+
Sbjct: 42 EYLASENVKEVLNLFL-----TRLPLLAQAPEKELEPILAVFINLIQESA-AFEDHVSKF 95
Query: 481 RQHLADIYERNQNWKEAANVLVGIPLETGQKQ 576
Q L I ++N N A ++ I T K+
Sbjct: 96 CQALEQIADQNNNLTPAILSVLSILFNTAVKE 127
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 6.2
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Frame = -2
Query: 704 SLVVSACSNEALLTNASACTG--SSTSRYSLAIFRYVSSL*STEYCFCPVSNGIPTKTLA 531
S + S S+ LT++++ T S+++ S A + S L S+ P+S+ T +
Sbjct: 243 SSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATS 302
Query: 530 AS---FQF*FRS*ISAKCCLILATCSSNEITLGCITSSAKCETSCETLSASSAKCVLTSV 360
AS + ++ L++ SS T TSS + T + S++ LTSV
Sbjct: 303 ASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSV 362
Query: 359 KSCLEITRLTFSLTIASMNAFNDSDNSCSVLFSISIRT 246
S + + LT S+N+ + + S + L S + T
Sbjct: 363 NSTTATSASSTPLT--SVNSTSATSASSTPLTSANSTT 398
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 359 KSCLEITRLTFSLTIASMNAFNDSDNSCSVLFSISIR 249
KS E + FS+T S+ ++ CS F +S R
Sbjct: 26 KSSFEEKKHNFSITNKSLETLRSQESPCSTTFPVSDR 62
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 262 LKSTEQELSESLKAFIEAIVNENVSLVISRQLLTD 366
L + E+ ++ + +EAI+ EN+ +++ Q L D
Sbjct: 957 LAKQKSEIEQAFQGDMEAIIAENLEIMVESQSLED 991
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 406 VKHYQPAVLSVCSHLSRVALKS-LGSHFH 323
++ Y AVLS+CS L+R ++ S + ++H
Sbjct: 155 IEQYLHAVLSLCSELARQSVNSVISGNYH 183
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 166 LQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 279
+Q R+YL L LH E NVL+E + +Q
Sbjct: 88 MQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQ 125
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 232 EKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQE 411
E+ R+VL L++ E + + SL+ ++ N+ SL + + + HL LLA S +
Sbjct: 434 EEERDVLESKLQTLEDD-NNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDK 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,928
Number of Sequences: 5004
Number of extensions: 68406
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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