Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P11
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9 signal... 75 9e-14
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z73424-4|CAA97778.2| 954|Caenorhabditis elegans Hypothetical pr... 32 0.63
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70780-1|CAA94819.1| 336|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical pr... 29 3.4
U58726-1|AAB00575.2| 215|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical... 29 3.4
Z54218-1|CAA90954.1| 315|Caenorhabditis elegans Hypothetical pr... 29 5.9
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 29 5.9
U41263-4|AAC24426.4| 779|Caenorhabditis elegans Hypothetical pr... 29 5.9
>AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9
signalosome subunit protein 4 protein.
Length = 412
Score = 74.5 bits (175), Expect = 9e-14
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Frame = +1
Query: 217 HKDQAEKYRNVLMEILKSTEQ---ELSESLKAFIEAIVNENVSLVISRQLLTDVSTHL-- 381
HK Q E + + L + +E +K I E S+V+SRQ ++ ++ L
Sbjct: 21 HKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDN 80
Query: 382 ALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLE 561
L + +S L +I+ R IS+E+QV +R LA +YE+ K+AA L+ I +
Sbjct: 81 QHLESECVKAISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSD 140
Query: 562 T-----GQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET-TNEQLQIYY 723
T G + K + ++I +L L+ + +AE +VNR S+L + N +QI +
Sbjct: 141 TSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQIEH 200
Query: 724 KVCYARV 744
K ARV
Sbjct: 201 KALQARV 207
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 723 QSLLCKSLDYRRKFIEAAQRYNELS 797
++L + D +R+F+EAAQRY ELS
Sbjct: 201 KALQARVSDAKRRFVEAAQRYYELS 225
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
protein R07G3.3c protein.
Length = 1316
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 145 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 312
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 313 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 411
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
protein R07G3.3a protein.
Length = 1982
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 145 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 312
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 313 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 411
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
protein R07G3.3b protein.
Length = 1987
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +1
Query: 145 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 312
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 313 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 411
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>Z73424-4|CAA97778.2| 954|Caenorhabditis elegans Hypothetical
protein C44B9.1 protein.
Length = 954
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +1
Query: 229 AEKYRNVLM--EILKSTEQELSESLKAFIEAIVNENVSLVISR 351
+EKYR V E+L+ TEQ + L AF+EAI ++V+S+
Sbjct: 273 SEKYRFVYTAYEMLEKTEQVAEKLLTAFVEAIETTTSAVVLSK 315
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 30.3 bits (65), Expect = 1.9
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 4/188 (2%)
Frame = +1
Query: 169 QSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEL---SESLKAFIEAIVNENVSL 339
QS + EL +S D+ ++ L K + +EL +E +++ + N N
Sbjct: 408 QSALESSQELASSQ--KADKIQELEKELQNAQKRSSEELETANEMVRSLTATLENSNSET 465
Query: 340 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 519
I +Q L + L A +++ ++V+ + E+Q A I+ IY+
Sbjct: 466 EILKQKLETLDKELQ--ARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQMEVE 523
Query: 520 WKEAANVLVGIPL-ETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET 696
KE LV + L + Q S + L ++ L+ + +AEA + L AE
Sbjct: 524 -KEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLEAKLKAVEQAKAEAL----NSLLAEK 578
Query: 697 TNEQLQIY 720
+ Q Q++
Sbjct: 579 EHLQAQLH 586
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 30.3 bits (65), Expect = 1.9
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 4/188 (2%)
Frame = +1
Query: 169 QSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEL---SESLKAFIEAIVNENVSL 339
QS + EL +S D+ ++ L K + +EL +E +++ + N N
Sbjct: 408 QSALESSQELASSQ--KADKIQELEKELQNAQKRSSEELETANEMVRSLTATLENSNSET 465
Query: 340 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 519
I +Q L + L A +++ ++V+ + E+Q A I+ IY+
Sbjct: 466 EILKQKLETLDKELQ--ARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQMEVE 523
Query: 520 WKEAANVLVGIPL-ETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET 696
KE LV + L + Q S + L ++ L+ + +AEA + L AE
Sbjct: 524 -KEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLEAKLKAVEQAKAEAL----NSLLAEK 578
Query: 697 TNEQLQIY 720
+ Q Q++
Sbjct: 579 EHLQAQLH 586
>Z70780-1|CAA94819.1| 336|Caenorhabditis elegans Hypothetical
protein F46B6.2 protein.
Length = 336
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 762 ISFYNLNSCIANFVIYLQLLVGCFGL*Q 679
+SF++L C F +YL L +G F L Q
Sbjct: 194 VSFFHLRYCCTFFFLYLPLAIGMFSLLQ 221
>Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical
protein F02C12.1 protein.
Length = 815
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 774 AQRYNELSYRNIIHEDERDDVPQECPYMHRXWHL 875
A YN+ IH + D+P E P+MH + L
Sbjct: 49 ASCYNDTVVEESIHSKKSQDLPPEHPHMHHSYRL 82
>U58726-1|AAB00575.2| 215|Caenorhabditis elegans Hypothetical
protein T01C8.3 protein.
Length = 215
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 443 GCITSSAKCETSCETLSASSAKCVLTSVKSCLEITRL 333
GC TS C T S S C+ S C E+T +
Sbjct: 7 GCFTSPTDLPLGCSTNSRGSIFCICNSTDYCNEMTNV 43
>AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical
protein Y69A2AR.6 protein.
Length = 245
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 277 QELSESLKAFIEAIVN-ENVSLVISRQLLTDVSTHLAL-LADNVSQEVSHFALDVIQPRV 450
+E E L + I +I++ N+ +VI++ D+ HL + + Q F Q R+
Sbjct: 98 EEALEFLNSKIRSIMDYSNIQMVIAQSNAYDLLGHLQPDILKFIKQHNETFPT-AQQQRM 156
Query: 451 ISFEEQVASIRQHLADIYER 510
I QV +RQ +AD ER
Sbjct: 157 IDIRRQVDDVRQVMADNVER 176
>Z54218-1|CAA90954.1| 315|Caenorhabditis elegans Hypothetical
protein F37B12.1 protein.
Length = 315
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 428 SAKCETSCETLSASSAKCVLTSVKSC--LEITRLTFSLTIASMNAFNDSDNSCSVLFSIS 255
SAKCE C + ++ K LT KSC ++ TRL F L + + F+ + S S
Sbjct: 200 SAKCEAQCTSTVTTAPK--LTKAKSCDSIKRTRLYF-LVVYTCRFFSPTATSHSSHSLSF 256
Query: 254 IRTLRYF 234
+ T R F
Sbjct: 257 LGTCRVF 263
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 428 SAKCETSCETLSASSAKCVLTSVKSC 351
+A C+ SC++ +S+A+CV + SC
Sbjct: 338 AAACQPSCQSSCSSNAQCVQACLPSC 363
>U41263-4|AAC24426.4| 779|Caenorhabditis elegans Hypothetical
protein T19D12.6 protein.
Length = 779
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 485 CLILATCSSNEITLGCITSSAKCETSCETLSASSAKC 375
CL+ S+N C CE CE LS + +C
Sbjct: 11 CLVTIAGSTNVFQGSCAAEHVLCEQLCEALSPETYEC 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,947
Number of Sequences: 27780
Number of extensions: 390200
Number of successful extensions: 1367
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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