Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P11
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   8.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 431 SSAKCETSCETLSASSAKCVLTSV 360
           S+    T C TL  + +KC  TSV
Sbjct: 347 STETLNTKCNTLERTPSKCSQTSV 370


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 494  AKCCLILATCSSNEITLGCITSSAKCETSCE 402
            A   L  ATC  N+     IT++  C T  E
Sbjct: 940  APVALTAATCDQNKAVKKHITTTIDCSTQSE 970


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 214 LHKDQAEKYRNVLMEILK 267
           LH DQAE+Y+ +   +++
Sbjct: 251 LHADQAEEYKKIQQILIR 268


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 356 SCLEITRLTFSLTIASMNAFND--SDNSCSV 270
           SCL I R TF+  I+S++       D+S SV
Sbjct: 313 SCLVIDRETFNQLISSLDEIRTRYKDSSSSV 343


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 837 PQECPYMHR 863
           PQECPY  R
Sbjct: 5   PQECPYCRR 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,057
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)