Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P08
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical pr...    29   6.1  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 243 FLPQKPLIKTSTYYKIFTLYNTXLKIKI*KSKRERTSFCCCFF 115
           F  Q  ++ T  +  I T+Y   + I + + K +R    CC +
Sbjct: 788 FCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLVCCLY 830


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  THCGKRFKKKQQQNEVRSRFDF 157
           T  GK+ KKKQQ++ VR  FD+
Sbjct: 273 TSSGKKNKKKQQKSPVREEFDY 294


>Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical
           protein F13E6.3 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -2

Query: 496 LKTMVLKYNFFT--CRFQVGSLIQSLVGFSTLCWHKKTRCLLQ*YLLQHPSGLGRGL*YP 323
           LK ++L +  F+  C F V  +I S    ST+C H +   + Q +L++  S + +     
Sbjct: 72  LKAVMLLFKLFSYYCSFSVSHIISSFRPLSTMCDHPR---IFQMHLIERASKVYKWTETA 128

Query: 322 *SVVVPD 302
            S++V D
Sbjct: 129 DSIIVDD 135


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 463 TCRFQVGSLIQSLVGFSTLCWHKK 392
           T R+ +GSL+Q  +  ST+C+ KK
Sbjct: 39  TIRYILGSLLQDYINESTMCYWKK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,976
Number of Sequences: 27780
Number of extensions: 259804
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)