Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P07
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 37 0.019
09_02_0096 - 4221935-4222231 35 0.075
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615... 32 0.70
01_05_0639 + 23873735-23873814,23873932-23874148,23874259-238744... 31 1.2
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 30 2.1
01_03_0034 + 11828889-11828897,11829465-11829484,11829697-118297... 29 6.5
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 8.6
02_02_0570 - 11591854-11592054,11593388-11593507,11594205-115945... 28 8.6
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 37.1 bits (82), Expect = 0.019
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 314 IYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDD-TMIQVNMFGLALNIIYVMIYFNYS 490
IYK ST+G +P++ + +L + Y + D+ +I +N G + IY+ +Y Y+
Sbjct: 36 IYKSKSTQGFQSVPYVVALFSAMLWIYYALLKSDECLLITINSAGCVIETIYIAVYLVYA 95
>09_02_0096 - 4221935-4222231
Length = 98
Score = 35.1 bits (77), Expect = 0.075
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 239 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 415
+ +VG + ++ G S W I K+ + P+L ++ +L + YG I+
Sbjct: 8 RNVVGIVGNAISFGLFLSPVLTFWRIIKEKDMKYFKADPYLATLLNCMLWVFYGLPIVHP 67
Query: 416 DT--MIQVNMFGLALNIIYVMIYFNYS 490
++ ++ +N GL + +Y+ I+F +S
Sbjct: 68 NSILVVTINGIGLVIEAVYLTIFFLFS 94
>01_05_0637 +
23860857-23860936,23861057-23861273,23861388-23861549,
23862850-23863155
Length = 254
Score = 31.9 bits (69), Expect = 0.70
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 239 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 415
+ +VG I ++ G S W I K+ P+L ++ +L + YG I+
Sbjct: 8 RNVVGIIGNVISFGLFLSPVPTFWRICKRKDVEQFKADPYLATLLNCMLWVFYGIPIVHP 67
Query: 416 DT--MIQVNMFGLALNIIYVMIYFNYS 490
++ ++ +N GL + Y+ I+F YS
Sbjct: 68 NSILVVTINGIGLIVEGTYLFIFFLYS 94
>01_05_0639 +
23873735-23873814,23873932-23874148,23874259-23874420,
23876037-23876357
Length = 259
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +2
Query: 239 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 415
+ +VG I ++ G + W I K+ P+L ++ +L + YG ++
Sbjct: 8 RNVVGIIGNVISFGLFLAPVPTFWRICKRKDVEEFKADPYLATLLNCMLWVFYGIPVVHP 67
Query: 416 DT--MIQVNMFGLALNIIYVMIYFNYS 490
++ ++ +N GL + Y++I+F YS
Sbjct: 68 NSILVVTINGIGLLVEGTYLLIFFLYS 94
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 340 DRHHAVPRRCCYDH-PELAIWLHTP*RHHDSSQHV---RSGLKYHLRDDI 477
D AVP CC P IW+H P S H+ RSGL +H D+
Sbjct: 121 DNIDAVPSGCCLSSSPGSVIWVHKPPEGRRGSYHIRMDRSGL-FHTYPDM 169
>01_03_0034 +
11828889-11828897,11829465-11829484,11829697-11829739,
11831088-11831252,11832745-11832864,11834709-11834879
Length = 175
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 498 KVKVWAQIGLAGAVSAALIGYAQTEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNX 677
K V IGL+GAV A+ +A ++ + G I F + ASPL + +IQ+
Sbjct: 29 KWAVGLDIGLSGAV-LAVATFAISQLQLRIRV-IGIICACFNVLMYASPLTAVINVIQHE 86
Query: 678 STXGMP 695
+ MP
Sbjct: 87 NVDAMP 92
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 211 RLSGYSSTVQRDSGLDSGLRNHWADVLRQFHMLGHIQAGQH 333
RLS ST S L G N WAD+ +QFH + +G H
Sbjct: 434 RLSLSESTFTWFSSLPYGSINSWADLEKQFH--SYFYSGVH 472
>02_02_0570 -
11591854-11592054,11593388-11593507,11594205-11594583,
11594897-11594933,11595293-11595335
Length = 259
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 513 AQIGLAGAVSAALIGYAQTEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNXSTXGM 692
A++ AV+A ++ A T + + + G + F + A+PL +K +IQ S M
Sbjct: 108 AEVAFVAAVAALVLNLAHTHERRSMIV--GILCVLFGTGMYAAPLSVMKMVIQTKSVEYM 165
Query: 693 P 695
P
Sbjct: 166 P 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,730
Number of Sequences: 37544
Number of extensions: 407139
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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