Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P06
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0085 - 22265143-22265226,22265294-22265602,22266915-222671... 87 2e-17
01_06_1336 + 36396904-36397014,36397141-36397191,36397681-363977... 87 2e-17
04_04_0033 + 22295974-22296290,22296441-22296684,22296797-222969... 83 4e-16
01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119... 80 2e-15
04_01_0350 - 4610444-4610668,4612181-4612969 77 1e-14
04_04_0032 + 22291469-22291818,22292438-22292681,22292873-222930... 77 2e-14
10_01_0066 + 848523-849269,849520-849741 74 2e-13
10_01_0065 + 845447-846187,846969-847193 74 2e-13
04_04_0034 + 22298636-22298952,22299057-22299300,22299395-222995... 74 2e-13
10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90... 73 3e-13
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 71 9e-13
03_02_0297 + 7196624-7196931,7198015-7198258,7198385-7198573,719... 69 4e-12
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122... 69 5e-12
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532... 66 5e-11
01_06_1337 + 36404245-36404355,36404467-36404517,36405304-364053... 56 5e-08
01_02_0107 - 11197013-11197244,11197384-11197514 30 2.1
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296... 29 3.7
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 28 8.5
03_05_0500 + 24942047-24942541 28 8.5
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 28 8.5
>05_05_0085 -
22265143-22265226,22265294-22265602,22266915-22267187,
22267413-22267500,22267620-22267696,22267791-22267841,
22267967-22268077
Length = 330
Score = 86.6 bits (205), Expect = 2e-17
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Frame = +1
Query: 382 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDG 561
L G +P + LGT P + V A+ GYR ID A Y NEK I A+K D+G
Sbjct: 7 LNTGAKIPSVGLGTWQAEPGVVGNAVYAAVKAGYRHIDCAQAYFNEKEIGVALKKVFDEG 66
Query: 562 TVRRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*RKXKFYTE 735
V+R+++FI KLW T H + V A +L DL ++ DL+LI P+R +K +
Sbjct: 67 IVKREDIFITSKLWCTNHAPEDVPVALDSTLQDLQTDYVDLYLIHWPVRM--KKGAGFGG 124
Query: 736 DXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQ 861
+ D W L G A+ GVSNF+S ++
Sbjct: 125 QNVL----PTDIPATWAAMEKLHDSGKARAIGVSNFSSKKLE 162
>01_06_1336 +
36396904-36397014,36397141-36397191,36397681-36397757,
36397876-36397963,36398616-36398891,36399002-36399250,
36400315-36400398
Length = 311
Score = 86.6 bits (205), Expect = 2e-17
Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Frame = +1
Query: 382 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDG 561
L G +P + LGT P + + V A+ GYR ID A +Y NE + A+K ++G
Sbjct: 7 LNTGAKIPSVGLGTWQSDPGVVGDAVYAAVKAGYRHIDCARMYKNENEVGIALKKLFEEG 66
Query: 562 TVRRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*RKXKFYTE 735
V+R++LFI KLW H + V + +L+DL E+ DL+LI P R TE
Sbjct: 67 VVKREDLFITSKLWCDCHAPEDVPESLDKTLSDLQLEYLDLYLIHWPFRVKKGSGISNTE 126
Query: 736 DXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNS 849
D Y D W L G ++ GVSNF+S
Sbjct: 127 D-----YIPPDIPSTWGAMEKLYDSGKSRAIGVSNFSS 159
>04_04_0033 +
22295974-22296290,22296441-22296684,22296797-22296976,
22297749-22297979
Length = 323
Score = 82.6 bits (195), Expect = 4e-16
Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Frame = +1
Query: 370 ATLKLRDGTFMPVIALGTALLP--PRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIK 543
A L+ D MP + +G A P P T + V A++ G+R DTA +Y E + +AI
Sbjct: 8 AVLRHGDARPMPAVGMGVAEYPSTPERTRDAVLAALEAGFRHFDTASLYRTEAPLGEAIA 67
Query: 544 NKIDDGTVR-RDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*R 714
G + R+E F+ KLW T DLV + R SL +L E+ DL+LI PI
Sbjct: 68 EATRRGLLASREEAFVTTKLWCTQCHPDLVLPSLRESLRNLQMEYVDLYLIHLPISVKPG 127
Query: 715 KXKFYTEDXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
F + V+ FD+ W GLAK GVSNF + I K
Sbjct: 128 PMVFPVKKEDVV---PFDFGGVWRAMEECHRLGLAKAIGVSNFTTKHIDK 174
>01_06_1338 +
36411536-36411646,36411738-36411791,36411898-36411974,
36412108-36412195,36412289-36412561,36412651-36412968
Length = 306
Score = 80.2 bits (189), Expect = 2e-15
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 1/157 (0%)
Frame = +1
Query: 382 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEK-LIXKAIKNKIDD 558
L G +P + LGT + ++V A+ GYR ID A +Y NE+ +I A+K DD
Sbjct: 7 LNTGARIPSVGLGTYKAGTGVVADVVSAAVKAGYRHIDCAPLYKNEQEVIGGALKKLFDD 66
Query: 559 GTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLIPIRCX*RKXKFYTED 738
G V+R++LFI K+W + + V A +L DL ++ DL+LI +K +
Sbjct: 67 GVVKREDLFITSKIWCSDLAPEDVPLAMDSTLKDLQLDYVDLYLIHWPFQIKKG----TE 122
Query: 739 XSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNS 849
S + D W L G A+ GVSNF+S
Sbjct: 123 LSPENFVKPDIPSTWRAMEQLYDSGKARAIGVSNFSS 159
>04_01_0350 - 4610444-4610668,4612181-4612969
Length = 337
Score = 77.4 bits (182), Expect = 1e-14
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 5/171 (2%)
Frame = +1
Query: 367 VATLKLRDGTFMPVIALGT-ALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIK 543
V + L G MPV+ GT + PP + A+ +GYR +DTA +YG E + A+
Sbjct: 20 VPCVTLNSGHAMPVLGFGTGSSTPPADLAATIAHAVRLGYRHLDTAAVYGTEGAVGAAVA 79
Query: 544 NKIDDGTV-RRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*R 714
+ G V R ELF+ KL V A R SL+ LG ++ DLFLI P+ +
Sbjct: 80 EAVRCGAVASRGELFVTTKLSMADAHPPRVVAALRESLSRLGLDYVDLFLIHWPVAIGKK 139
Query: 715 KXK-FYTEDXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
T D FD W G GLA++ GVSNF++ + +
Sbjct: 140 DAAGELTWDDLSRGLVPFDMEGVWRGMEECHRLGLARSIGVSNFSAAKMSR 190
>04_04_0032 +
22291469-22291818,22292438-22292681,22292873-22293052,
22293843-22294070
Length = 333
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 6/164 (3%)
Frame = +1
Query: 391 GTFMPVIALGTALLPP---RLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDG 561
G +P + LGTA L + A+++GYR IDTA +YG+E+++ +A+ G
Sbjct: 25 GRAVPAVGLGTASLRSVGEESFRGALLAALEVGYRHIDTASVYGSERVVGEAVAGAARRG 84
Query: 562 TVR-RDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*RKXKFYT 732
+ R+E+F+ K+W T DLV + R SL +L E+ D++L+ P+ K +
Sbjct: 85 VIACREEVFVTTKVWCTQCHPDLVLPSLRESLQNLQMEYVDMYLVHWPMSVKPTKPHYPM 144
Query: 733 EDXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
+ ++ D W GLAK GVSNF + +Q+
Sbjct: 145 KREDIM---PMDLRGVWQAMEECHQLGLAKMIGVSNFTTKKLQE 185
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 73.7 bits (173), Expect = 2e-13
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 4/159 (2%)
Frame = +1
Query: 400 MPVIALGTALLP---PRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDGTV- 567
MP I +GTA P TT + AI++GYR DTA +Y E + +A+ + G V
Sbjct: 18 MPRIGMGTAAFPFTSSEETTAALLRAIELGYRHFDTARLYATEGCVSEAVAEAVRRGLVA 77
Query: 568 RRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLIPIRCX*RKXKFYTEDXSV 747
R ++F+ KLW + V A R +L +LG ++ DL L+ +
Sbjct: 78 SRADVFVTSKLWCSDLHAGRVVPAARETLRNLGMDYVDLLLVHWPATVAPGSYDFPFPKE 137
Query: 748 IQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
FD W G GLA+ GVSNF++ +++
Sbjct: 138 EMAPAFDMEGVWRGMEECHRLGLARAIGVSNFSAKKLEQ 176
>10_01_0065 + 845447-846187,846969-847193
Length = 321
Score = 73.7 bits (173), Expect = 2e-13
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Frame = +1
Query: 400 MPVIALGTALLP---PRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDGTV- 567
MP + +GTA P TT + AI++GYR DTA IY E + +A+ + G +
Sbjct: 16 MPRVGMGTAAFPFTSSEDTTAAMLRAIELGYRHFDTARIYATEGCVGEAVAEAVRRGLIA 75
Query: 568 RRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLIPIRCX*RKXKFYTEDXSV 747
R ++F+ K+W + V A R +L +LG ++ DL L+ +
Sbjct: 76 SRADVFVTSKIWCSDLHAGRVVPAARETLRNLGMDYVDLLLVHWPVSLTPGNYDFPFPKE 135
Query: 748 IQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
+ FD W G GLA+ GVSNF++ +++
Sbjct: 136 VILPSFDMEGVWRGMEECHRLGLARAIGVSNFSAKKLEQ 174
>04_04_0034 +
22298636-22298952,22299057-22299300,22299395-22299574,
22300819-22300842,22301055-22301285
Length = 331
Score = 73.7 bits (173), Expect = 2e-13
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Frame = +1
Query: 355 SVKEVATLKLRDGTFMPVIALGTA---LLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKL 525
+V EVA L+ G MP + +GTA P A+++G+R DTA +YG E
Sbjct: 3 AVPEVA-LRHGAGRPMPAVGVGTADSAATSPETKRGAALAALEVGFRHFDTAALYGTEAP 61
Query: 526 IXKAIKNKIDDGTVR-RDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--P 696
+ +AI G V R+E+F+ KLW T LV + R SL +L E+ DL+L+ P
Sbjct: 62 LGEAIAEATRRGLVASREEVFVTTKLWCTQCHPGLVLPSLRESLRNLQMEYVDLYLVHWP 121
Query: 697 IRCX*RKXKFYTEDXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
I + + FD+ W GLAK GVSNF + + K
Sbjct: 122 ISVKPGPPMLPVKREDAV---PFDFEGVWRAMEECHRLGLAKAIGVSNFTTKHLDK 174
>10_01_0070 +
902999-903354,904354-904600,904718-904897,905087-905332
Length = 342
Score = 72.9 bits (171), Expect = 3e-13
Identities = 56/163 (34%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Frame = +1
Query: 382 LRDGTFMPVIALGTALLP------PRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIK 543
LR G MP++ +GTA P P + V AID GYR DTA YG E + +A+
Sbjct: 21 LRSGKPMPLVGMGTASFPLDAPQLPATVRDAVLRAIDAGYRHFDTAAAYGTEAPLGEAVL 80
Query: 544 NKIDDGTV-RRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*R 714
+ G V RD+L+I KLW + V A R +L +L + DL+LI PIR R
Sbjct: 81 EAVRAGMVASRDDLYITSKLWISDTHPGRVLPALRRTLRNLQMVYIDLYLIHWPIRL--R 138
Query: 715 KXKFYTEDXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNF 843
+ + D W GL K GVSNF
Sbjct: 139 VEQETPSPVYDNDFVMMDMEGVWKDMEECQRLGLTKAIGVSNF 181
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 71.3 bits (167), Expect = 9e-13
Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 11/171 (6%)
Frame = +1
Query: 382 LRDGTFMPVIALGTALLP-----PRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKN 546
L G MP + +GTA P P ++V AI+ GYR DTA +Y E ++ A+
Sbjct: 6 LSSGKPMPRVGMGTASFPLGATDPSTVKDVVLRAIEAGYRHFDTAAVYQTEAILGDAVAE 65
Query: 547 KIDDGTV-RRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLIPIRCX*RKXK 723
+ G V RDEL+I KLW V + R +L + E+ DL+LI R
Sbjct: 66 AVRAGLVASRDELYITSKLWVAHAHPGHVLPSLRRALRKMQMEYLDLYLIHFPVSMR--- 122
Query: 724 FYTEDXSVIQYS-----XFDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQ 861
ED + YS D W GL K GVSNF+ ++
Sbjct: 123 -LAEDPESMTYSKDDLVMMDMEGVWKEMEECQRLGLTKAIGVSNFSCKKLE 172
>03_02_0297 +
7196624-7196931,7198015-7198258,7198385-7198573,
7198650-7198874
Length = 321
Score = 69.3 bits (162), Expect = 4e-12
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Frame = +1
Query: 391 GTFMPVIALGTALLPPRLTT--EIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDGT 564
G MP + +GTA+ PR V AI+ GYR DTA Y E I +A + G
Sbjct: 12 GFGMPRVGMGTAVQGPRPEPIRRAVLKAIEAGYRHFDTAAHYETEAPIGEAAAEAVRSGA 71
Query: 565 VR-RDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*RKXKFYTE 735
+ R +LFI KLW + D V A R +L +L E+ DL+L+ P+ K Y
Sbjct: 72 IASRADLFITSKLWCSDAHRDRVLPALRQTLWNLQMEYVDLYLVHWPVS---MKPGRYKA 128
Query: 736 DXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFN 846
+ + FD W GLAK GV NF+
Sbjct: 129 PFTADDFVPFDMRAVWEAMEECHRLGLAKAIGVCNFS 165
>02_01_0179 -
1227573-1227803,1227916-1228138,1228159-1228185,
1228519-1228651,1228748-1228865,1229357-1229451,
1229886-1230048
Length = 329
Score = 68.9 bits (161), Expect = 5e-12
Identities = 39/108 (36%), Positives = 59/108 (54%)
Frame = +1
Query: 370 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNK 549
A L L G MP + LG + +++ +A+ +GYR D A Y NE + A+
Sbjct: 11 AALALSSGHTMPSVGLGVWRMDSPAIRDLIHSALRIGYRHFDCAADYQNEAEVGDALAEA 70
Query: 550 IDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI 693
G V+R++LFI KLW++ H +VE AC+ SL L ++ DL+LI
Sbjct: 71 FQTGLVKREDLFITTKLWNSDH-GHVVE-ACKDSLKKLRLDYLDLYLI 116
>05_05_0196 +
23152389-23152658,23153042-23153092,23153167-23153240,
23153356-23153443,23153541-23153738,23153824-23153895,
23154034-23154093,23154194-23154370,23154975-23155064
Length = 359
Score = 65.7 bits (153), Expect = 5e-11
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = +1
Query: 409 IALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDGTVRRDELFI 588
+A+ + + ++ + GYR +DTA YG E+ + K +K ++ G R+D LF+
Sbjct: 69 VAMASKPILSVFANNLIVNHLQAGYRHVDTAAQYGIEQEVGKGLKAAMEAGINRKD-LFV 127
Query: 589 MGKLWSTFHRTDLVETACRISLADLGWEFFDLFLI--PIRCX*RKXKFYTEDXSVIQYSX 762
K+W T + V A + +L DL ++ DL+LI P R + E V++
Sbjct: 128 TSKIWCTNLAPERVRPALKNTLKDLQLDYIDLYLIHWPFRLKDGAHQ-PPEAGEVLE--- 183
Query: 763 FDYXDXWFGXXNLXXKGLAKNXGVSNFNSTXIQK 864
FD W L GL K+ GV NF+ T + +
Sbjct: 184 FDMEAVWREMERLVTDGLVKDIGVCNFSVTKLNR 217
>01_06_1337 +
36404245-36404355,36404467-36404517,36405304-36405337,
36405428-36405485,36405499-36405586,36406110-36406385,
36406505-36406753,36407558-36407641
Length = 316
Score = 55.6 bits (128), Expect = 5e-08
Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Frame = +1
Query: 382 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIXKAIKNKIDDG 561
L G +P + LGT P + V A+ GYR ID A Y NEK + A+K ++
Sbjct: 7 LNTGAKIPSVGLGTWQSDPGVVGNAVYAAVKAGYRHIDCASAYNNEKEVGLALKKLFEE- 65
Query: 562 TVRRDELFIMGKLWSTF-------HRTDLVETACRISLADLGWEFFDLFLIPIRCX*RKX 720
V + ++G L H + V A +L DL E+ DL+LI +K
Sbjct: 66 -VELEFQCLLGALLQLIRGDGCDHHAPEDVPEALDATLNDLQLEYLDLYLIHWPFRTKKG 124
Query: 721 KFYTEDXSVIQYSXFDYXDXWFGXXNLXXKGLAKNXGVSNFNS 849
+ S Y D W L G ++ GVSNF+S
Sbjct: 125 SSIGKPES---YLPPDIPSTWAAMEKLYDSGKSRAIGVSNFSS 164
>01_02_0107 - 11197013-11197244,11197384-11197514
Length = 120
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 497 PLIFTATKSSXEKRSRTRLTTAP*GETSFSLWVNCGVHS 613
P+ A +SS ++R R LT+ G +SFS WV+ GV+S
Sbjct: 35 PVKHEARRSSGQQRGRRCLTSRSTGYSSFSSWVS-GVNS 72
>09_02_0012 +
2965797-2966714,2966756-2967011,2967051-2967147,
2967175-2967634,2967804-2968117,2968220-2968235
Length = 686
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 223 VKMESPGSGQRRLDNGKQKRDTGDLTDEQYKTRIAELNEAKLKGSVKEVATLKLRD 390
V E PG G + D G +T + K R A L EA + +KE A K +D
Sbjct: 603 VYAEFPGGGNNDAQEPLLE-DAGKITCTRQKVRAASLEEAVFRTEIKEGAEGKAKD 657
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 327 CDPGLILFVCEVSRVSLLFAVVQAPLPAPGRLHLDRS 217
C L+ F+ + L F V P PAP LH R+
Sbjct: 341 CSTSLVHFLIALQPTPLPFGVQLKPAPAPRELHTSRA 377
>03_05_0500 + 24942047-24942541
Length = 164
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 685 RGRKTPSPGLPVKSCRPSPP 626
RG +P P LP CRP PP
Sbjct: 127 RGGLSPLPPLPKPGCRPMPP 146
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 242 GAGSGAWTTANRSETRETSQTNNIRPGSQN*TKLS*KG 355
G G+GA ++A + TR+T N+ R GS + +S G
Sbjct: 215 GGGAGAGSSAGGAMTRDTEAENDSRSGSDHLDAISAAG 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,240,999
Number of Sequences: 37544
Number of extensions: 377584
Number of successful extensions: 1373
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -