Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P05
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 235 6e-63
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 120 3e-28
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 117 3e-27
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 113 4e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 110 2e-25
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 102 8e-23
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 7e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 98 1e-21
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 95 2e-20
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 94 2e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 94 3e-20
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 92 1e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 91 1e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 90 4e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 89 1e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 88 1e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 84 3e-17
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 79 6e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 69 7e-13
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 62 1e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 60 3e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 9e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 54 3e-08
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.054
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.22
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.88
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 28 1.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.7
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 6.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 8.2
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 235 bits (575), Expect = 6e-63
Identities = 111/177 (62%), Positives = 136/177 (76%)
Frame = +3
Query: 342 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 521
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 522 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIEL 701
PIALSG+D+LARAKNGTGKT A+ IP LE+VD KK IQ LI+VPTRELALQTSQ+C L
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTL 135
Query: 702 AKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
KH +++VMVTTGGT LRDDI+R+ V +++ TPGR++DL K VA +C V+
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVM 192
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 120 bits (289), Expect = 3e-28
Identities = 59/147 (40%), Positives = 91/147 (61%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 612 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQV 791
+D QALI+ PTRELA Q ++ + L ++ GGT +RDD+ + V V
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 792 IIATPGRMIDLMDKQVARMDQCRMLVL 872
++ TPGR+ D++ ++ D +M VL
Sbjct: 141 VVGTPGRVHDMIQRRALPTDAVQMFVL 167
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 117 bits (281), Expect = 3e-27
Identities = 56/149 (37%), Positives = 91/149 (61%)
Frame = +3
Query: 426 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 605
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 606 EQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNV 785
+ +D QALI+ PTRELA+Q + + L H +++ GGT++ +DI ++
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 786 QVIIATPGRMIDLMDKQVARMDQCRMLVL 872
V+ TPGR+ D++ ++ R +ML+L
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLIL 169
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 113 bits (271), Expect = 4e-26
Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Frame = +3
Query: 396 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 575
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 576 KTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGT 746
KT A+ +P+LE++ PKK T + LI+ PTRELA+Q + ++A TDI V + GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 747 NLRDDIMRIYQNVQVIIATPGRMIDLM 827
+L+ + + ++IATPGR ID M
Sbjct: 369 SLKLQEQELRKRPDIVIATPGRFIDHM 395
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 110 bits (265), Expect = 2e-25
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Frame = +3
Query: 264 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 443
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 444 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP- 620
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A+ IP++E +
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 621 -KKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVII 797
+ALI+ P RELALQT ++ + +K TD+R + GG +L + + +++
Sbjct: 135 LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVV 194
Query: 798 ATPGRMIDL 824
ATPGR + L
Sbjct: 195 ATPGRFLHL 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 102 bits (244), Expect = 8e-23
Identities = 51/151 (33%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 612 VDPKKDTIQALIVVPTRELALQTSQICIELAKH-TDIRVMVTTGGTNLRDDIMRI---YQ 779
++P + L++ TRELA Q +K+ D+R V GG N++ D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 780 NVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
+ +++ATPGR+ L+ +++ +++ + VL
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVL 203
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99.1 bits (236), Expect = 7e-22
Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 612 VDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIY 776
++ + D L++ PTRELA+Q Q C + K + IR GG I +
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 777 QNVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
+ V++ IATPGR++D++D + + LVL
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVL 275
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 98.3 bits (234), Expect = 1e-21
Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 10/220 (4%)
Frame = +3
Query: 243 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 416
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 417 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 575
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 576 KTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLR 755
KT A+ + +L +VD QA+ + P+RELA Q + E+ K+T+++ T G ++
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK---TAFG--IK 220
Query: 756 DDIMRIYQ-NVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
D + + + + Q++I TPG ++DLM ++ ++ VL
Sbjct: 221 DSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 260
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 94.7 bits (225), Expect = 2e-20
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE- 608
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 609 -----QVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMR- 770
Q+D + I AL++VPTRELA Q + +L + TN D + R
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 771 -IYQNVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
+ ++IATP R + + V +D+ + LV+
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVI 170
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 94.3 bits (224), Expect = 2e-20
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Frame = +3
Query: 429 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 608
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 609 QVD---PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQ 779
++ K + L+V PTRELA+QT + L + T+++ +V GG + + R +
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAK 284
Query: 780 NVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
N VII TPGR++DL++ Q LVL
Sbjct: 285 NASVIIGTPGRLLDLINDGSIDCSQVGYLVL 315
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.9 bits (223), Expect = 3e-20
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Frame = +3
Query: 447 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 626
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 627 DTIQ-----ALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQV 791
A+I+ PTRELA+Q + C K +IR GG ++D I + + ++
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 792 IIATPGRMIDLMDK---QVARMDQCRMLVL 872
++ TPGRMID++ +V + +C LVL
Sbjct: 545 VVCTPGRMIDVLSANAGRVTNLHRCTYLVL 574
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 91.9 bits (218), Expect = 1e-19
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
Frame = +3
Query: 381 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 560
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 561 KNGTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRV 725
K G+GKT A+ IP +E + P+ T +I+ PTRELALQ + EL K+
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKYHHQTF 192
Query: 726 MVTTGGTNLRDDIMRIYQNVQVIIATPGRMID 821
+ GG N R + ++ + V +++ATPGR++D
Sbjct: 193 GIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.5 bits (217), Expect = 1e-19
Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Frame = +3
Query: 342 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 491
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 492 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL---EQVDPKKDTIQ-----ALI 647
+PS IQ A+IP+ L KD++ A+ G+GKT A+ IP++ ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 648 VVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLM 827
+ PTRELA Q + A+ R + GG + ++ Q +++ATPGR++D +
Sbjct: 331 LAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL 390
Query: 828 DKQVARMDQCRMLVL 872
++++ + QC +V+
Sbjct: 391 ERRLFVLSQCTYVVM 405
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 89.8 bits (213), Expect = 4e-19
Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = +3
Query: 441 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP 620
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 621 KKDT--IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVI 794
D +QAL+V PTRELA Q Q + +IRVM TGG ++ + ++ V+
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVV 246
Query: 795 IATPGRMIDLMDK 833
+ATPGR+ ++++
Sbjct: 247 VATPGRLWSVINE 259
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 88.6 bits (210), Expect = 1e-18
Identities = 44/143 (30%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Frame = +3
Query: 414 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 581
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 582 GAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDD 761
A+ +PV++++ A+++ PTRELA Q S+ + +R +V GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 762 IMRIYQNVQVIIATPGRMIDLMD 830
+ + + V++ TPGR++D ++
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLE 180
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 88.2 bits (209), Expect = 1e-18
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Frame = +3
Query: 426 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 605
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 606 E----------QVD--------PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMV 731
VD P+K LI+ PTREL Q + + + +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 732 TTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQVARMDQCRMLVL 872
GG ++R I +I Q ++ ATPGR++DL+D+ + + LVL
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVL 335
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 83.8 bits (198), Expect = 3e-17
Identities = 41/116 (35%), Positives = 72/116 (62%), Gaps = 4/116 (3%)
Frame = +3
Query: 504 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 671
IQ+ IP AL G+D+L AK G+GKT A+ +P++E + KK D + AL++ PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 672 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLMDKQV 839
+QT + +++ + + GG N +++ R+ + +++ TPGR++ +D+ V
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAV 179
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 79.4 bits (187), Expect = 6e-16
Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Frame = +3
Query: 492 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 671
+P+ IQE I L G++ + AK G+GKT A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 672 LQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIATPGRMIDLM----DKQV 839
+Q + L + +++ + GG ++ + + + V++ATPGR+ DL+ ++ +
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148
Query: 840 ARMDQCRMLVL 872
A + + + LV+
Sbjct: 149 AGLRRIKFLVM 159
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 69.3 bits (162), Expect = 7e-13
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Frame = +3
Query: 432 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 611
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 612 V---DPKKDTIQALIVVPTRELALQTSQICIELAKHTD---------IRVMVTTGGTNLR 755
V D + + ALIV PTRELA Q + EL + + M G L
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 756 DDIMRIYQ-NVQVIIATPGRMIDLM 827
+D+ + N V+I TPGR+ +++
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEML 147
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.1 bits (144), Expect = 1e-10
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Frame = +3
Query: 483 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDT--IQAL 644
G+EK +P+Q+ + + + ++ + +AK GTGKT A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 645 IVVPTRELALQTSQICIELAKHTDIRVMVTTGG-TNLRDDIMRIYQNVQVIIATPGRMID 821
I+ PTRELALQ + +L T IRV GG + +R++ N ++IATPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 60.5 bits (140), Expect = 3e-10
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Frame = +3
Query: 495 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVD--PKK-----DTIQALI 647
P+ IQ +P L+ KD A+ G+GKT AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 648 VVPTRELALQTSQICIELAKHTDIRVMVTT---GGTNLRDDIMRIYQNVQVIIATPGRMI 818
+ PTREL Q + +L + +V+ GG + + RI + V ++I TPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLA 281
Query: 819 D-LMDKQVARMDQCRMLVL 872
D L + + + Q R +VL
Sbjct: 282 DHLENTEALDVSQVRWVVL 300
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 55.6 bits (128), Expect = 9e-09
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Frame = +3
Query: 522 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQICIE 698
P+ G DV A G+GKT +Y IP+++ + + ++ +++VPTREL +Q ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 699 LAKHTDIRVMVTTGGTNLRDDIMRIYQN-----VQVIIATPGRMID 821
++V TG +LR + ++ + + V+++TPGR++D
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD 273
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 54.0 bits (124), Expect = 3e-08
Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Frame = +3
Query: 504 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQT 680
IQ +IP S +D+LA A G+GKT AY P+L+++ +A+IV PTREL Q
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 681 SQICIELAKHTDIRVM-VTTGGTNLRDDIMRIYQNVQVIIATPGRMI 818
+ +L+ T ++++ ++ +++ ++ + + I TP R++
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.054
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +3
Query: 447 LKRELLMGIF-EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK 623
L +EL+ ++ + EK Q +I +G V+ +GK+ Y IP+L+ + +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 624 KDTIQALIVVPTRELALQTSQICIELAKH----TDIRVMVTTGGTNL--RDDIMR 770
+ A V PT+ LA + I++ + +IRV G T L R+ I+R
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIR 408
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 761 IISKVCASCSNHYTNVCVFCQFNTN 687
I+ CA C NH ++C+ CQ NT+
Sbjct: 36 IVVDNCAICRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.88
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -1
Query: 739 PVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGSTCSKTGIQ*APVLPV-PF 563
P+ ++ + ASS + V SANS T+ + +S + ST + T P+ V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST-TATSASSTPLTSVNST 365
Query: 562 LALASTSFPLRAI----GIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVSVTS 404
A +++S PL ++ AS ++ + ++++ N+S+ LP SV+S
Sbjct: 366 TATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 788 LYILINTHYIISKVCASCSNHYTNVCVFCQFN 693
+Y LI+ + I +C+ H VC+FC F+
Sbjct: 222 VYGLISLWWAIRCICSRTKLHLVQVCLFCWFS 253
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 767 AYLSKCTSDYCHTWAY 814
A L++CT DY H+W Y
Sbjct: 3007 ALLNRCTIDYYHSWDY 3022
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 50 VVVEYRVSSPFLNFYLAILEILGERDK 130
++VEY++ S FL FYLA +GE D+
Sbjct: 235 LLVEYKMESGFLRFYLA--PKIGEEDE 259
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +3
Query: 486 WEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYC-----IPVLEQVDPKKDTIQALIV 650
W P P +A+ P+A + +++ + + + YC IPV K D I+ +
Sbjct: 572 WNAPIPYPDANCPMAPTYRNLTSEQEEMYEEVLKYCLELKEIPVASNSSKKTDLIELERL 631
Query: 651 VPTRELALQ 677
TRE L+
Sbjct: 632 WLTRECILR 640
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 273 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 419
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,765
Number of Sequences: 5004
Number of extensions: 64110
Number of successful extensions: 226
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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