Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P03
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    31   0.29 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   3.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   8.3  

>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +1

Query: 346 RPLLWL*XAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRLGK 483
           R LL L   +++    H KQK   +YKK ++   KKA   IK+L K
Sbjct: 38  RALLGLQEQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEK 83


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 216 IPFWCHPFTFNNWNQKELPSL 154
           +P W   F   NW+   LPSL
Sbjct: 452 LPIWLTEFACTNWDDSNLPSL 472


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 461 SMAFLT-LTYCSFLYFIKSFC 402
           S+AF+  L YCSF +FI   C
Sbjct: 432 SLAFIVCLKYCSFYFFIGPIC 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,355
Number of Sequences: 5004
Number of extensions: 46829
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)