Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P03
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285...    31   1.6  
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085...    30   2.2  
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653...    28   8.7  

>02_04_0160 -
           20427774-20428217,20428301-20428402,20428503-20428595,
           20428675-20428860,20428966-20429213,20429292-20429412,
           20430674-20430718,20431086-20431138,20431152-20431173
          Length = 437

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 225 LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALXGYYAATQLSLKT 404
           +N   Q+  R  A  +  +  +A + HQ AA LL +  KLT   L L G   + +  L +
Sbjct: 334 INEGAQERYRVHAQAEASQ-QQANEAHQQAAALLEEVQKLTVENLQLKGELQSQREELNS 392

Query: 405 KR 410
           ++
Sbjct: 393 QK 394


>09_02_0524 -
           10207711-10208154,10208237-10208338,10208439-10208531,
           10208612-10208683,10208730-10208798,10208928-10209175,
           10209256-10209370
          Length = 380

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 225 LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALXGYYAATQLSLKT 404
           +N   Q+  R  A  +  +  +A + HQ AA LL +  KLT   L L G   + +  L +
Sbjct: 277 INEGAQERYRVNAQAEAAQ-QQANEAHQQAAALLEEVQKLTVENLQLKGELQSQREELNS 335

Query: 405 KR 410
           ++
Sbjct: 336 QK 337


>07_01_0817 +
           6533316-6533849,6533996-6534064,6534528-6534767,
           6537747-6537965,6538041-6538133,6538231-6538332,
           6538415-6538858
          Length = 566

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 237 HQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALXGYYAATQLSLKTKR 410
           ++ H +AEA        +A   HQ AA LL +  KLT   L L G   + +  L +++
Sbjct: 471 YKVHAQAEA-----AQQQANDAHQQAAVLLEEVQKLTVENLQLKGELQSQREELNSQK 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,729
Number of Sequences: 37544
Number of extensions: 246210
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)