Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P03
         (894 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    36   0.002
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   4.1  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 231 LAHQQHRRAEAHLKNHRYDEAMQC-HQSAAELLVDAMKLTTSTLALXGYYAATQLSLKTK 407
           L+ QQ    E H+KN+R    + C H S+  LLV+   L T  L+L      T+  +  K
Sbjct: 670 LSVQQLNNVEEHVKNYRPQILVLCGHPSSRPLLVNFAYLLTKKLSLLVCGHVTKTHVSQK 729

Query: 408 RFNKVQKRA 434
             N +QK+A
Sbjct: 730 YRNHLQKKA 738


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 415 IKYKKEQYVRVKKAMDTIKR 474
           I+ KK++YV +K+A  T++R
Sbjct: 370 IESKKQEYVALKEAYGTVRR 389


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,528
Number of Sequences: 2352
Number of extensions: 11999
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)