Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P03
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011707-1|AAH11707.1|  287|Homo sapiens nuclear receptor bindin...    56   2e-07
AY267840-1|AAP03082.1|  287|Homo sapiens comodulator of PPAR and...    56   2e-07
AY267839-1|AAP03081.1|  237|Homo sapiens comodulator of PPAR and...    56   2e-07
AL590502-2|CAO03491.1|  287|Homo sapiens nuclear receptor bindin...    56   2e-07
AL136656-1|CAB66591.1|  287|Homo sapiens hypothetical protein pr...    56   2e-07
AK054957-1|BAB70833.1|  287|Homo sapiens protein ( Homo sapiens ...    56   2e-07
AF267866-1|AAG44735.1|  277|Homo sapiens hNRBF-2 protein.              56   2e-07

>BC011707-1|AAH11707.1|  287|Homo sapiens nuclear receptor binding
           factor 2 protein.
          Length = 287

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


>AY267840-1|AAP03082.1|  287|Homo sapiens comodulator of PPAR and
           RXR 2 protein.
          Length = 287

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


>AY267839-1|AAP03081.1|  237|Homo sapiens comodulator of PPAR and
           RXR 1 protein.
          Length = 237

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


>AL590502-2|CAO03491.1|  287|Homo sapiens nuclear receptor binding
           factor-2 protein.
          Length = 287

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


>AL136656-1|CAB66591.1|  287|Homo sapiens hypothetical protein
           protein.
          Length = 287

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


>AK054957-1|BAB70833.1|  287|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30395 fis, clone BRACE2008385, highly similar to
           Rattus norvegicus NRBF-2 mRNA for nuclear receptor
           binding ).
          Length = 287

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


>AF267866-1|AAG44735.1|  277|Homo sapiens hNRBF-2 protein.
          Length = 277

 Score = 56.0 bits (129), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 222 PLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLA 362
           PLNLAHQQ RRA+  L   +Y+EA+ CH+ AA  L +AMKLT S  A
Sbjct: 7   PLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,023,815
Number of Sequences: 237096
Number of extensions: 1464074
Number of successful extensions: 11300
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11292
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)