Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P01
(1087 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.053
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.37
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.65
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 1.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 6.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 8.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.017
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Frame = +1
Query: 490 PPPPXPPPXX----PPPPPPXP 543
PPPP PPP PPPPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.5 bits (68), Expect = 0.21
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 493 PPPXPPPXXPPPPPPXP 543
PPP P PPPPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 490 PPPPXPPPXXPPPPPPXP 543
P PP P PPPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +1
Query: 817 PATKXGXXTPPXXTPXXAX--PPPXPPP 894
PA G PP P A PPP PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +2
Query: 191 PXPXPPPXKXGXPXPXXKKXXTXXXPXPPKNP 286
P P P P G P P P PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 806 PXPPPXXXXAXAPPPPXRXXXXXHHHXPPP 895
P PPP PPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.053
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +1
Query: 490 PPPPXPPPXXPPP--PPPXP 543
PPPP PPP PP PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 33.5 bits (73), Expect = 0.053
Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Frame = +1
Query: 490 PPPPXP---PPXXPPPPPP 537
PPPP P PP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 32.7 bits (71), Expect = 0.092
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = +1
Query: 490 PPPPXPP---PXXPPPPPPXP 543
PPPP PP P PPPPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 508 PPXXPPPPPPXP 543
PP PPPPPP P
Sbjct: 5 PPGNPPPPPPPP 16
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Frame = +1
Query: 493 PPPXPPPXXPPP---PPPXP 543
PP PPP PPP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQP 24
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/72 (26%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Frame = +3
Query: 189 PPXPAPPPXXGXXXPPXXKXXXXXXXPPHPKTXKXXP-XXXKXPQXXPLXKXPXTPXKXX 365
P PAPP PP PP P + P P P P P K
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 366 PXKQXPXPXXPP 401
P PP
Sbjct: 185 PSAPSLPSAVPP 196
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 490 PPPPXPPPXXPPPPPP 537
PPPP P P P PP
Sbjct: 7 PPPPAPAPAAAAPAPP 22
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.65
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = +1
Query: 490 PPPPXPPPXXPPPP--PPXP 543
P PP PP PPPP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Frame = +1
Query: 490 PPPPXPP--PXXPP--PPPPXP 543
PPPP P P PP PPPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Frame = +1
Query: 490 PPPPX--PPPXXPPPPPPXP 543
PPPP PPP PP P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGP 1727
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.4 bits (48), Expect(2) = 1.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 490 PPPPXPPP 513
PPPP PPP
Sbjct: 306 PPPPPPPP 313
Score = 23.4 bits (48), Expect(2) = 1.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 520 PPPPPPXP 543
PPPPPP P
Sbjct: 307 PPPPPPPP 314
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 542 GXGGGGGGXXGGGXGG 495
G GGG GG GGG GG
Sbjct: 27 GFGGGRGGARGGGRGG 42
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 844 PPXXTPXXAXPPPXPPP 894
PP TP A P P PPP
Sbjct: 224 PPTYTPKQADPLPAPPP 240
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 496 PPXPPPXXPPPPPPXP 543
PP PP PPP P P
Sbjct: 467 PPLPPAAPAPPPAPAP 482
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 542 GXGGGGGGXXGGGXGGGG 489
G GGG G GGG GG G
Sbjct: 252 GGFGGGPGGFGGGPGGHG 269
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 496 PPXPPPXXPPPPPP 537
P PPP PPPPPP
Sbjct: 942 PAFPPP--PPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.141 0.497
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,945
Number of Sequences: 5004
Number of extensions: 19185
Number of successful extensions: 327
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 571756234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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