Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_O21
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 152 4e-37
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 60 2e-09
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 51 1e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 51 1e-06
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 48 9e-06
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical pr... 32 0.64
Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical pr... 32 0.64
AC006603-1|AAF39749.1| 772|Caenorhabditis elegans Hypothetical ... 29 4.5
Z54270-8|CAA91029.2| 301|Caenorhabditis elegans Hypothetical pr... 29 6.0
U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 152 bits (368), Expect = 4e-37
Identities = 75/189 (39%), Positives = 120/189 (63%), Gaps = 3/189 (1%)
Frame = +3
Query: 234 LLGIQCNDFVMIAADQSNSHSIMIMKDDE-EKIYKISDRLVMGVIGDSGDTNQFAEYIAK 410
L+GI ++V++AAD++ I+ D E +K Y++ +L M IG+ GD QF ++ +
Sbjct: 7 LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66
Query: 411 NIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGY-DKENGPELYFMDYL 587
N+QLY +RNGYE+ PS A F RR++AE LRS Y V+VL+GGY DKE+ L +DYL
Sbjct: 67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126
Query: 588 ASSV-KVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPXFQV 764
A+ + + P+ G+ G +IMDR +KKD TE E ++ KC+ E +R ++P ++V
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKV 186
Query: 765 TVVNRDGIK 791
++++ G +
Sbjct: 187 VIIDKKGYR 195
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 63.3 bits (147), Expect = 2e-10
Identities = 37/153 (24%), Positives = 78/153 (50%)
Frame = +3
Query: 261 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 440
+++ AD + +I EK++K+++ + G + D +Q + ++ N++L ++ G
Sbjct: 58 LVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTG 117
Query: 441 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 620
+ A +++L Y Y +L+GG D GP LY +++ PF A
Sbjct: 118 RKARVITALRQAKQHLFNYQGYIGAY---LLIGGVDP-TGPHLYMCSANGTTMAFPFTAQ 173
Query: 621 GYGGYLSLSIMDRYHKKDATETEAYDILKKCVQ 719
G G Y +++I++R K D T+ EA ++++ ++
Sbjct: 174 GSGSYAAITILERDFKVDMTKDEAEKLVQRALE 206
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 60.1 bits (139), Expect = 2e-09
Identities = 38/144 (26%), Positives = 66/144 (45%)
Frame = +3
Query: 261 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 440
+++A D S I KI I DR+V + G + D + +AK LY++R
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 441 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 620
+ SAA+ + L Y V ++ GYDK+ GP+++ +D ++ +
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLS--VGSMVAGYDKK-GPQIFKVDSEGDRCQLKVCSV 199
Query: 621 GYGGYLSLSIMDRYHKKDATETEA 692
G G + I+D ++K T+ EA
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEA 223
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +3
Query: 243 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 419
I +F ++A+D + + I I+ D EKI ++D +++ G GD Q + + +
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 420 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 599
Y+ ++ A RNL Y R PY+ ++ G D+ ++ D +
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174
Query: 600 KVPFAAHGYGGYLSLSIMD 656
++ ++A G + + +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +3
Query: 243 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 419
I +F ++A+D + + I I+ D EKI ++D +++ G GD Q + + +
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 420 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 599
Y+ ++ A RNL Y R PY+ ++ G D+ ++ D +
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174
Query: 600 KVPFAAHGYGGYLSLSIMD 656
++ ++A G + + +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 48.0 bits (109), Expect = 9e-06
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Frame = +3
Query: 237 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 416
LGI ++ +++AA++ N H ++ EK+Y++SD + V G + D N ++
Sbjct: 35 LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWA 94
Query: 417 QLYKMRNGYELGPSAAASFTRRNLAEY--LRSSTPYFVNVLMGGYDKENGPELYFMD 581
Y+ G E+ Y + P+ V++L G+DK G +LY D
Sbjct: 95 ASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSD 151
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 38.3 bits (85), Expect = 0.007
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +3
Query: 222 NLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEY 401
N Q +G++ D V++A + S ++ DD+ K+ +IS + G D +
Sbjct: 30 NGQPSVGLRAKDGVVLATENVGS----VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKK 85
Query: 402 IAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSS--TPYFVNVLMGGYDKENGPELYF 575
K Y+M G E+ + + EY +S P+ ++L+ G+DK G L F
Sbjct: 86 ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 37.9 bits (84), Expect = 0.010
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 5/203 (2%)
Frame = +3
Query: 198 YDCKMSNINLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSG 377
Y K N + ++ D +IA + S+ I+ D +Y+IS + IG
Sbjct: 27 YAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL-IVADTVTSVYQISQSVGCCAIGMIP 85
Query: 378 DTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYF---VNVLMGGYD 548
D + +K +NGY++ P + +L +Y + +L YD
Sbjct: 86 DAKFQIKRAQGEAASWKYKNGYDM-PCELLAKKMADLNQYYTQNAEMRSLGCALLFISYD 144
Query: 549 KENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKK--DATETEAYDILKKCVQE 722
E GPE+Y +D + + G + S +++ KK + T TEA ++ + +Q
Sbjct: 145 DEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ- 203
Query: 723 VHKRLFVSLPXFQVTVVNRDGIK 791
+ V +V VV +D K
Sbjct: 204 TSLGIDVRSKDLEVVVVTKDNSK 226
>Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 743 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 600
+++SFVN + L VICLC + F+V + T + T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195
>Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 743 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 600
+++SFVN + L VICLC + F+V + T + T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195
>AC006603-1|AAF39749.1| 772|Caenorhabditis elegans Hypothetical
protein B0524.4 protein.
Length = 772
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 624 YGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLF 740
+ GYL+ + + HK T +A+DILK ++ + K F
Sbjct: 187 FNGYLNAMTLLKKHKDQDTIEKAFDILKASIRAMQKLNF 225
>Z54270-8|CAA91029.2| 301|Caenorhabditis elegans Hypothetical
protein F11C1.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.0
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Frame = +3
Query: 351 VMGVIGDSGDTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRN---LAEYLRSSTPYF 521
V+G G+ G F + +N+ + R G + + N L LR S +
Sbjct: 24 VLGNPGNDGFYTDFGRRLIRNLIAREERLGTRRVQFVFYTLSHLNHVLLPTSLRCSESHK 83
Query: 522 VNVLMGGYDKENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKKD 674
VN D+ + +YL +V HG G Y+ LSI+ Y K D
Sbjct: 84 VNERFSLADQVQHKLDFVKEYLPRGNRVYMFGHGDGAYMLLSILP-YIKDD 133
>U58727-2|AAB00582.2| 462|Caenorhabditis elegans Hypothetical
protein D1005.2 protein.
Length = 462
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 648 YSNLDIHHNHELQMVPSRLMLNSP*NTVQVHFLYHNHP 535
+S +HHNHEL P + S N+V+V L HP
Sbjct: 372 HSTFKVHHNHELGAPPVISLDPSIYNSVEVVDLKFPHP 409
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,327
Number of Sequences: 27780
Number of extensions: 357210
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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