Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O19
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    86   8e-18
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    85   1e-17
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.17 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   2.1  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   2.8  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   6.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   8.5  

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 85.8 bits (203), Expect = 8e-18
 Identities = 34/52 (65%), Positives = 44/52 (84%)
 Frame = +3

Query: 195 PYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 350
           P+GHA VAG++RYP KV K MG  +I KRS++KPF+KV+NYNHLMPTRY ++
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALE 88



 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 18/33 (54%), Positives = 27/33 (81%)
 Frame = +2

Query: 86  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGT 184
           M KI+KPGKV LV  GR+AG+K ++++N D+G+
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGS 33



 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +1

Query: 331 QHVIQLTSVFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 489
           ++ ++L ++    +     +P++R   +   +  FEE+Y++GK+ WFF  LRF
Sbjct: 84  RYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 34/52 (65%), Positives = 44/52 (84%)
 Frame = +3

Query: 195 PYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 350
           P+GHA VAG++RYP KV K MG  +I +RS++KPF+KVVNYNHLMPTRY ++
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALE 88



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +1

Query: 331 QHVIQLTSVFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 489
           ++ ++L ++    +A   K+P +R   R   +  FEE+Y+SGK+ WFF  LRF
Sbjct: 84  RYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = +2

Query: 86  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGT 184
           M KI+KPGKV L+  GR+AG+K ++++  D+G+
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGS 33


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +2

Query: 77  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 178
           P+K+   + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 121 QHYFTRLHYFAHLGGIFPLLVD 56
           Q YFT ++ F   G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 92  KIMKPGKVVLVLSGRYAGRKAIVVKNYD 175
           + ++ G+VVLV  G Y G+ A++V   D
Sbjct: 6   RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 258 GKNKIHKRSKIKPFVKVVNYNH 323
           G + I  R K  P  K+VNYNH
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNH 49


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 331 QHVIQLTSVFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 462
           QH   L         K L DP+ R+K  F ++   + +Y+  KN
Sbjct: 145 QHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,803
Number of Sequences: 5004
Number of extensions: 47824
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)