Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_O19
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 73 3e-13
10_08_0951 - 21769342-21769752 71 1e-12
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 35 0.10
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 30 2.2
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 30 2.9
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 30 2.9
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 29 6.7
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 29 6.7
11_05_0008 - 18335815-18336080,18340549-18340923,18342570-18342669 28 8.9
>02_02_0470 - 10700092-10700505
Length = 137
Score = 72.9 bits (171), Expect = 3e-13
Identities = 29/65 (44%), Positives = 45/65 (69%)
Frame = +3
Query: 192 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF*KIQ 371
+PYGH VAG+ +YP+KV ++ K K+S++K F+K+VN+ H+MPTRYT+D F +
Sbjct: 36 RPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVA 95
Query: 372 RKRPE 386
P+
Sbjct: 96 SGGPD 100
Score = 56.0 bits (129), Expect = 4e-08
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVPPESAQEDGKE 265
M K +KPGK V++L GRYAGRKA++V+ ++EGT + CL + P + ++D +
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 266 *NPQEVQDKAF 298
++ + K F
Sbjct: 61 KTAKKSRVKCF 71
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +1
Query: 424 RVRFEERYKSGKNKWFFQKLRF 489
+ R EER+K+GKN+WFF KLRF
Sbjct: 116 KARLEERFKTGKNRWFFTKLRF 137
>10_08_0951 - 21769342-21769752
Length = 136
Score = 71.3 bits (167), Expect = 1e-12
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +3
Query: 192 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 350
+PYGH VAG+ +YP+KV ++ K K+S++K F+K+VN+ HLMPTRYT+D
Sbjct: 36 RPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTRYTLD 88
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/71 (35%), Positives = 43/71 (60%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVPPESAQEDGKE 265
M K +KPGK V++L GR+AGRKA++V+ ++EGT + CL + P + ++D +
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 266 *NPQEVQDKAF 298
++ + K F
Sbjct: 61 KTAKKSRVKCF 71
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 418 NTRVRFEERYKSGKNKWFFQKLRF 489
+ + R E+R+K+GKN+WFF KLRF
Sbjct: 113 SAKARLEDRFKTGKNRWFFTKLRF 136
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 34.7 bits (76), Expect = 0.10
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 77 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 181
P+K+ + PG V+++L+GRY G++ + +K G
Sbjct: 68 PTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSG 102
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 171 TTKVPPXKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNH 323
T+ VPP PY + G RYP + + KN + R + N NH
Sbjct: 614 TSSVPPSPPYRVTGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDANMNH 664
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 356 TEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 240
TE + WH++I YNL++ +YL + D V+F
Sbjct: 312 TEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 350
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 356 TEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHF 240
TE + WH++I YNL++ +YL + D V+F
Sbjct: 310 TEEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 348
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.7 bits (61), Expect = 6.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 181
M + PG V+++L+GR+ G++ + +K G
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 291 LSWTSCGFYSFPSSCALSGGTCRYQRRRHARMAC 190
L W GF +C SGG CRY A AC
Sbjct: 211 LEWQKNGFGDC-DACNASGGQCRYNNDSAAAFAC 243
>11_05_0008 - 18335815-18336080,18340549-18340923,18342570-18342669
Length = 246
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +1
Query: 52 LCQRVKGISLQDGQNNEAG*SSAGPKWPVRGSQGY------RSQELRRRYLRTSHTGMPS 213
L RV + + +G A P+ V S GY R LRRR LRT+ TGM
Sbjct: 95 LTDRVAALETPSNEEVVSGDDDAHPEDTVYDSSGYIDALATRQARLRRR-LRTNRTGMGG 153
Query: 214 SLVSTGT 234
+ GT
Sbjct: 154 TRHQQGT 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,841,177
Number of Sequences: 37544
Number of extensions: 359446
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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