Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_O19
(909 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 90 2e-18
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 90 2e-18
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 3.5
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 4.6
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 4.6
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 4.6
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 29 4.6
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 89.8 bits (213), Expect = 2e-18
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +3
Query: 192 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF*K-- 365
+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F K
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTN 95
Query: 366 IQRKRPERPCKT*EAAFQHASTF 434
I ++ + P K +A + S F
Sbjct: 96 INKEALKAPSKKRKALVEVKSKF 118
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVPPESAQEDGKE 265
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG S + + + P + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Score = 54.4 bits (125), Expect = 1e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 382 LKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 489
LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 101 LKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 89.8 bits (213), Expect = 2e-18
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +3
Query: 192 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF*K-- 365
+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F K
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTN 95
Query: 366 IQRKRPERPCKT*EAAFQHASTF 434
I ++ + P K +A + S F
Sbjct: 96 INKEALKAPSKKRKALVEVKSKF 118
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVPPESAQEDGKE 265
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG S + + + P + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Score = 54.4 bits (125), Expect = 1e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 382 LKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 489
LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 101 LKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 92 KIMKPGKVVLVLSGRYAGRKAIVVK 166
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 216 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 356
AG++R ++ + NK KR KI K YNHL+P T+D+S
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYS 453
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 216 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 356
AG++R ++ + NK KR KI K YNHL+P T+D+S
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYS 427
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 216 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 356
AG++R ++ + NK KR KI K YNHL+P T+D+S
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYS 453
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = -2
Query: 413 RSFLRFAGSFRSFALNFSKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHFPG 234
++FL A +R F + + ++ +T +++++ Y + + + P V VHFPG
Sbjct: 212 QNFLFAAHIYRRFGAHMNLYLISSVTSFYELMKEYEKEGYVTIQPWVK-------VHFPG 264
Query: 233 VPVDTSD 213
VP + +D
Sbjct: 265 VPKEIAD 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,950
Number of Sequences: 27780
Number of extensions: 290786
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -