Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O17
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   157   2e-39
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    39   8e-04
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   6.2  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   6.2  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  157 bits (381), Expect = 2e-39
 Identities = 75/158 (47%), Positives = 107/158 (67%)
 Frame = +3

Query: 411 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 590
           QT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + D Y ++
Sbjct: 65  QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117

Query: 591 RHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLASPQDAAATTVP 770
           R AAE HRQ R++ ++ IKPGM+M+D+   +E T R L+ EDGLK+G+  P   +     
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHCA 177

Query: 771 AHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTL 884
           AHYTPN GDTT+L+  DV+K+D G H+NGRI+D AFT+
Sbjct: 178 AHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFTM 215


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
 Frame = +3

Query: 534 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC----EELEKTARR 701
           TSE        + +   + + A E  +   K +    +PG  + DIC    E L +  ++
Sbjct: 7   TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66

Query: 702 LIGEDGLKAGLASPQDAAATTVPAHYTPNTGD---TTVLEYDDVVKIDFGTHING 857
           +        G+A P   +   + AH +P   D      L+  DVVKI  G HI+G
Sbjct: 67  VYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDG 121


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 HARLDPIADVFSCLPVGFSSMS 591
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 567 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 674
           + D+  E+ +  E+H +T +H +  + P   +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +3

Query: 570 KDIYQEIRHA--AEAHRQTRKHIRN-WIKPGMTMIDI-CEELEKTARR-LIGEDGLKAGL 734
           KD+ Q I +A    A     + +R  W+KPG  ++D+    +++  +R L+G+   ++  
Sbjct: 227 KDLIQHISNADLVIAALGKPEFVRGEWLKPGSVVVDVGINAVQRNGKRVLVGDVHFES-- 284

Query: 735 ASPQDAAATTVPAHYTPNT 791
           AS   ++ T VP    P T
Sbjct: 285 ASKVASSITPVPGGVGPMT 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,662
Number of Sequences: 5004
Number of extensions: 52162
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)