Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O14
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.9  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    28   8.6  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      28   8.6  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    28   8.6  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/64 (28%), Positives = 22/64 (34%)
 Frame = +3

Query: 693 PXXSXXGXXGXPPKXXLGRFSXXXPRPPPRXRVRXXPPSXKXXXXXPXPPXKXXNXXXXP 872
           P  S  G    PP           PR PP  R    PPS +       P  +  N    P
Sbjct: 128 PRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTP 187

Query: 873 PAPL 884
           P+P+
Sbjct: 188 PSPI 191



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
 Frame = +3

Query: 726 PPKXXLGRFSXXXPRPPPRXRVRXXPPSXKXXXXXP--XPPXKXXNXXXXPPAP 881
           PP     R     P PPP  RV   PP        P   PP         PP+P
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = +1

Query: 694 PXXLXXXPGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXP 873
           P  L    G  P   P G         PP    G  P         PPPP         P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775

Query: 874 PLPXRFSG 897
           P P  F G
Sbjct: 776 P-PGGFKG 782



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/63 (30%), Positives = 19/63 (30%)
 Frame = +1

Query: 694 PXXLXXXPGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXP 873
           P  L    G  P   P G         PP SG    P P       PPPP         P
Sbjct: 732 PGGLPPITGGPPPPPPPGGL-------PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784

Query: 874 PLP 882
           P P
Sbjct: 785 PPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = +1

Query: 694 PXXLXXXPGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXP 873
           P  L    G  P   P G         PP    G  P         PPPP         P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775

Query: 874 PLPXRFSG 897
           P P  F G
Sbjct: 776 P-PGGFKG 782



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/63 (30%), Positives = 19/63 (30%)
 Frame = +1

Query: 694 PXXLXXXPGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXP 873
           P  L    G  P   P G         PP SG    P P       PPPP         P
Sbjct: 732 PGGLPPITGGPPPPPPPGGL-------PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784

Query: 874 PLP 882
           P P
Sbjct: 785 PPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = +1

Query: 694 PXXLXXXPGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXP 873
           P  L    G  P   P G         PP    G  P         PPPP         P
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358

Query: 874 PLPXRFSG 897
           P P  F G
Sbjct: 359 P-PGGFKG 365



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/63 (30%), Positives = 19/63 (30%)
 Frame = +1

Query: 694 PXXLXXXPGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXP 873
           P  L    G  P   P G         PP SG    P P       PPPP         P
Sbjct: 315 PGGLPPITGGPPPPPPPGGL-------PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367

Query: 874 PLP 882
           P P
Sbjct: 368 PPP 370


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +3

Query: 726 PPKXXLGRFSXXXPRPPPRXRVRXXPPSXKXXXXXPXPPXKXXNXXXXPPAPL 884
           PP   +   S   P PPP   +   P S       P PP    N    PP PL
Sbjct: 507 PPLLGIAPMSTNAPPPPPMPGMA--PLSTGAPTPPPPPPVGMANGGPPPPPPL 557


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +1

Query: 715 PGXXPXKXPSGAFXXXXXDXPPASGXGXXPLPXKXXXXXPPPPXXXXXXXXXPPLP 882
           PG      P   F       PP  G G  P P       PPPP         PP P
Sbjct: 78  PGPGGIPPPPPMFAGGIPPPPPMMG-GIPPPPPMFGAPPPPPPPSGLGVAPQPPRP 132


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 776 PPXPGXXXPPFRXXXGGGXXPP 841
           PP PG   PP     GGG  PP
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPP 811


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 776 PPXPGXXXPPFRXXXGGGXXPP 841
           PP PG   PP     GGG  PP
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPP 811


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 776 PPXPGXXXPPFRXXXGGGXXPP 841
           PP PG   PP     GGG  PP
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPP 811


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 776 PPXPGXXXPPFRXXXGGGXXPP 841
           PP PG   PP     GGG  PP
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPP 811


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,490,472
Number of Sequences: 27780
Number of extensions: 147296
Number of successful extensions: 382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)