Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    30   0.38 
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    29   0.67 
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    27   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.3  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   8.3  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   8.3  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = -2

Query: 830  PVLKXTTISIRNMVSDRQLKAIQRVLRSSLKKEMATGRMI----KFATRSSSMHKSQ*NL 663
            PVL+  ++S+     D   K+  R+  +  K  +AT  ++    K++T    +     +L
Sbjct: 803  PVLRQLSLSLIYENPDVVRKSSMRLFNTLQKNGLATQLLVLLSQKYSTCIYDVTDENSHL 862

Query: 662  KLLHGWMTQCPAAFCLMRSFISAFFEPKSF 573
            KL+     +C     L+  F++    PKS+
Sbjct: 863  KLISSLQDECSDVLYLLMEFLNMVCSPKSY 892


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 459 SLYGTPVEPAPPAPDAKQGLPAE 527
           S+Y + V+PAPP PD +Q + +E
Sbjct: 155 SMYDSVVDPAPPMPDHEQDVKSE 177


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 387 SDADMSLKQGSGTGKVHFGGLDDVSLYGTPVEPAPPAPDAKQGLPAEPVASPLPAHRQQT 566
           ++  + +K  S   +        VS   T + P    P+  Q L  EP +S +P H   +
Sbjct: 2   NEITLFIKSSSANAERRINPQWTVSQLKTKLVPIVGTPEQYQKLTYEPASSTVPGHVFTS 61

Query: 567 CDETLRLKE 593
            +E L L E
Sbjct: 62  EEENLDLGE 70


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +3

Query: 474  PVEPAPPAPDAKQGLPAEPV----ASPLPA 551
            P   APP P    GLP  PV    A P+PA
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = +3

Query: 489 PPAPDAKQGLPAEPVASPLPAHRQQTCDETLRLKEGTYEGA 611
           PPAP  K  L AE  AS   A        TL   +GT E A
Sbjct: 365 PPAPSGKPSLTAEEWASGKDAQPDLLDMSTLYESKGTVEKA 405


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 412 RAAAPAKYTSVAWTMCPCTERQWNQHRRRRTQSRGFLRNQ 531
           + A PAK  + AW+     + + N  R +R   + FL+ Q
Sbjct: 507 KLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEFLKAQ 546


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 447 LDDVSL-YGTPVEPAPPAPDAKQGLPAEPVASPLPAHRQQTCDETLRLKE 593
           LD++S  Y +P     P PD +     +P+  P P   ++    T+RL E
Sbjct: 186 LDEISTAYASPTSINEPLPDQQLSSSTKPIKVPKPVSLRKAL--TIRLGE 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,516
Number of Sequences: 5004
Number of extensions: 67424
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)