Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O12
         (1047 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.      31   5.3  
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen...    31   5.3  
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag...    31   5.3  

>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
          Length = 2912

 Score = 31.5 bits (68), Expect = 5.3
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 808  GRAGXPLPPSPSXXVXXXGXPXXXGSXADXTXXXGCPGR 924
            G  G P PP PS  V   G P   G   + T   G PGR
Sbjct: 2192 GAVGLPGPPGPSGLVGPQGSPGLPGQVGE-TGKPGAPGR 2229


>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
            protein.
          Length = 2944

 Score = 31.5 bits (68), Expect = 5.3
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 808  GRAGXPLPPSPSXXVXXXGXPXXXGSXADXTXXXGCPGR 924
            G  G P PP PS  V   G P   G   + T   G PGR
Sbjct: 2224 GAVGLPGPPGPSGLVGPQGSPGLPGQVGE-TGKPGAPGR 2261


>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
           precursor variant protein.
          Length = 1027

 Score = 31.5 bits (68), Expect = 5.3
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 808 GRAGXPLPPSPSXXVXXXGXPXXXGSXADXTXXXGCPGR 924
           G  G P PP PS  V   G P   G   + T   G PGR
Sbjct: 863 GAVGLPGPPGPSGLVGPQGSPGLPGQVGE-TGKPGAPGR 900


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,679,285
Number of Sequences: 237096
Number of extensions: 1742433
Number of successful extensions: 4715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4682
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14207814782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)