Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O12
         (1047 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    30   2.4  
Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical pr...    30   3.2  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   4.2  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    29   5.5  
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ...    29   7.3  

>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +1

Query: 808 GRAGXPLPPSPSXXVXXXGXPXXXGSXADXTXXXGCPG 921
           G AG P PP P+      G P   G+    T   G PG
Sbjct: 208 GPAGPPGPPGPAGNPGTDGAPGNPGAPGQVTETPGTPG 245


>Z77667-7|CAB01238.2|  534|Caenorhabditis elegans Hypothetical
           protein M04B2.5 protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/83 (20%), Positives = 36/83 (43%)
 Frame = +3

Query: 78  WSCTWFTKQIFLFICLLKSYRYLKNKTDSFNITETLHIPIMYSMLFNLTQTGPGXGLVFP 257
           W+  + TK   ++  L+ S+R ++   D  +  E + +PI +S+   +         +F 
Sbjct: 291 WALLYLTK---MYTILIDSFRRVRGFVDKLDEDEIITLPIKFSVSVMILYLLSATMFIFE 347

Query: 258 GERVXAPPGPGWGXXPXGWFNLI 326
            + +  PP  G       +F+ I
Sbjct: 348 YDELSGPPDSGISFFHAFYFSFI 370


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/52 (32%), Positives = 19/52 (36%)
 Frame = +1

Query: 796 PPXXGRAGXPLPPSPSXXVXXXGXPXXXGSXADXTXXXGCPGRXXPGXGHXA 951
           P   GR G P  P P       G P   G+         CPGR   G G+ A
Sbjct: 285 PGPSGRPGAPGQPGPDGQ---PGAPGNDGTPGTDAAYCPCPGRGGGGGGYGA 333


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +1

Query: 808 GRAGXPLPPSPSXXVXXXGXPXXXGSXADXTXXXGCPG 921
           G AG P PP  S      G P   G+    T   G PG
Sbjct: 198 GEAGPPGPPGTSGNPGTDGAPGNPGAPGQVTETPGTPG 235


>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
           protein Y75B7AL.4a protein.
          Length = 1126

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 668 PPPXVIXSSTXKXRRTPXSARGSAV---FXQNDXXPPPPXXRHXPP 796
           PP  VI SS      TP S   S +     ++   PPPP   H PP
Sbjct: 791 PPSQVITSSPRTNHLTPKSHTLSPLAVKIERSTPLPPPPIPPHSPP 836


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,747
Number of Sequences: 27780
Number of extensions: 228106
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2782955308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)