Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O09
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49...    29   5.0  
06_01_1042 + 8187536-8187616,8187713-8188315                           29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  
10_05_0078 + 8891364-8891529,8891535-8891797                           28   8.8  

>12_01_0059 +
           494876-494924,496060-496211,496344-496531,496971-497027,
           497123-497282,497389-497457,497712-497837,497972-498091
          Length = 306

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 549 PDEHHKNRR---SSQRWRNPTGL*RYQAFPPGKLPRALSWFRPCRLPD 683
           P +H  N     SS+ + +P G+  +  FP   LP A S ++P  LP+
Sbjct: 10  PGKHRLNDTLLTSSRNYVSPQGILEFYNFPIPSLPSASSNYQPSSLPE 57


>06_01_1042 + 8187536-8187616,8187713-8188315
          Length = 227

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 754 RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNQESARGSXPGGNAWY 614
           RTE   A  +  R A   E+G +  G R+ R +   RGS   G +W+
Sbjct: 63  RTERERA-PLAARPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWW 108


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>10_05_0078 + 8891364-8891529,8891535-8891797
          Length = 142

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 641 PSCALLVPTLPLTGYLSAFLPS 706
           P CA L P +P+ G L  F+PS
Sbjct: 92  PPCAFLPPDVPVEGILMIFVPS 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,597,799
Number of Sequences: 37544
Number of extensions: 523458
Number of successful extensions: 1535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)