Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O08
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.015
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   2.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   4.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -3

Query: 963 PPPXGXXXKXPPPPPPXGKXGXXXXPXXPP 874
           PPP       PPPPPP G  G    P  PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 973 PXKPPXXGGXXKXPPPPPP 917
           P  PP   G    PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 973 PXKPPXXGGXXKXPPPPPP 917
           P  PP  G     PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = -1

Query: 932 PPPPPXXXKXXXXXXPXXXRGGGXXGXPPXGGFXXGGNPPXFFXXXXGGGPPPP 771
           PPPPP          P           PP      G  PP       G GPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPV--------PPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 933 PPPPPPXGKXGXXXXPXXPPGG 868
           PPPPPP G       P  PP G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 963 PPPXGXXXKXPPPPPPXG 910
           PPP       PPPPPP G
Sbjct: 14  PPPGFEPPSQPPPPPPPG 31


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 119 KXKKXKXKEKXKKXXKKXKKXKKK 190
           + KK   KEK +K  KK KK KKK
Sbjct: 448 RRKKEAKKEKKEKKEKKEKKEKKK 471


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 918 GGGGGGFXXXPPXXGGFXG 974
           GG GGG    PP  GGF G
Sbjct: 191 GGFGGGSGGPPPGPGGFGG 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/66 (27%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
 Frame = -2

Query: 967 KPPXXGGXXKX--PPPPPPXGXKXXXXXPXXXXGGGEXXGXPPXXXXXXGETPRXFXXXX 794
           KPP   G      PPPPPP         P    G       PP      G  P       
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSR 383

Query: 793 GGGXPP 776
               PP
Sbjct: 384 AVSNPP 389



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
 Frame = -3

Query: 969 RNPPPXGXXXKX---PPPPPPXGKXGXXXXPXXPPG 871
           R  PP G        PPPPPP         P  P G
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 875 RGGGXXGXPPXGGFXXGGNPPXF 807
           RG G    PP  GF  G  PP F
Sbjct: 122 RGVGYTAPPPPAGFGRGAPPPGF 144


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 119 KXKKXKXKEKXKKXXKKXKKXKKKXKKK 202
           + K  K KE+ KK  +K +K +++ KKK
Sbjct: 176 RVKTKKEKEREKKEREKLRKKQQQAKKK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,642
Number of Sequences: 5004
Number of extensions: 33637
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)