Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O08
         (974 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.11 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.7  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 763 PPXGGGGPPPXXXXKKXGGFPPXXNPPXGGXPXFP 867
           PP  G   PP        G PP  N P G  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMP-GSMPTMP 443



 Score = 25.4 bits (53), Expect = 0.78
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
 Frame = +1

Query: 763 PPXGGGGPPPXXXXKKXG---GFPPXXN--PPXGGXPXFPP 870
           P  G  GP P           G PP  +  PP GG P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 933  PPPPPPXGKXG 901
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 713 FPXGPPPPXXKXKKXXXPXXGGGXPPP 793
           FP GPPP             G G  PP
Sbjct: 51  FPPGPPPNNEDSSGVIVGASGYGFVPP 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,851
Number of Sequences: 438
Number of extensions: 7127
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)