Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_O04
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   1.6  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    28   2.1  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   8.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   8.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   8.4  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   8.4  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 219 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 365
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 563 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 387
           F  +  PTH F +YL   S     LI    + V +   + H + + R   +  S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205

Query: 386 DFAIASVV 363
              I  ++
Sbjct: 206 GLFILDLI 213


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 440 RHRTARQQQAASNEYIEYDFA 378
           R RT  +Q   + +YIEYDF+
Sbjct: 43  RKRTFDEQSEITKDYIEYDFS 63


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
 Frame = +3

Query: 225 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFD--V 398
           + ++K+D  + Y   G  D LV     A   LDA    +D     + +  Y E I D  +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430

Query: 399 LIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLE--KMFE 572
           L+  GL  P GS     E  + ++      E   + ++F    V    R +++E   +  
Sbjct: 431 LMGTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDF-SFNVAQGARLRFVEDNTLSP 489

Query: 573 EEMKKVLVYLKGFDPEQRIKLAR 641
           EE+ +  V  +   PEQ ++ AR
Sbjct: 490 EELSRTYVTNELSSPEQVLQKAR 512


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 220 NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSMY 399
           + S     +   S+  T SAT      S   A ++  +S+      NSTT A A S S+ 
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246

Query: 400 S 402
           S
Sbjct: 247 S 247


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 493 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 392
           SSL + M V    DSP ++ E  G S  P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,662
Number of Sequences: 5004
Number of extensions: 62614
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)