Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_O04
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 93 3e-19
05_01_0064 + 454786-455646,456537-456752 31 0.94
03_05_0871 + 28396964-28399843 31 1.6
03_05_0600 + 26021863-26022469,26022562-26022992 30 2.2
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 30 2.9
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 2.9
01_07_0339 + 42848065-42848943,42849308-42849526 30 2.9
01_06_1226 - 35518981-35519295,35519876-35520745 30 2.9
11_06_0291 + 22008412-22012284 29 5.0
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 29 5.0
11_06_0289 - 21969248-21973516 29 6.6
11_06_0185 + 21018045-21022307 29 6.6
06_01_0707 + 5136210-5136584 29 6.6
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 6.6
02_04_0635 - 24646603-24647337 29 6.6
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 28 8.8
09_04_0258 - 16175258-16176069,16176111-16176414 28 8.8
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 93.1 bits (221), Expect = 3e-19
Identities = 67/194 (34%), Positives = 95/194 (48%), Gaps = 2/194 (1%)
Frame = +3
Query: 159 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKY 338
+L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K
Sbjct: 59 DLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKS 115
Query: 339 LDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFE 518
++S S L++ RYG+ F+V+ GG P G++ + E + + + +
Sbjct: 116 IES--SDLNFSRYGDTFFEVVFIGGRTQP-GTIKPEEEGERHPYSVLDCAAQREAILPSV 172
Query: 519 QVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGN--GCVPPSVLL 692
K +RR +L K E M+K L L+ F+ +R KLA TAL +PP
Sbjct: 173 LYIQKTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPET-- 230
Query: 693 VLVNEHLLKDNCXS 734
V + LLKDN S
Sbjct: 231 --VFQPLLKDNLVS 242
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +3
Query: 414 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 593
L L GG+ G S + + + ED+ + ++F K + +Y+ FEE++++
Sbjct: 14 LCLCGGAACAAGRSGGEFSIVGYSEEDLASHDRLIELFEKWVAKYRKAYASFEEKVRRFE 73
Query: 594 VYLKGFDPEQRIKLARMTALWIG 662
V+ + I ++T+ W+G
Sbjct: 74 VFKDNLNHIDDIN-KKVTSYWLG 95
>03_05_0871 + 28396964-28399843
Length = 959
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 579 MKKVLVYLKGFDPEQRIKLARMTALWIGNGCVP 677
MK +YL F E I ++++ LWIG+ +P
Sbjct: 437 MKLCFMYLGAFKEETEISVSKLIKLWIGDDFIP 469
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 448 PSIDTEPPGSSRPPA 404
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 510 NFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNGCVP 677
N+E K + + Y + +K L+YL F + +I + +WI G VP
Sbjct: 676 NYEMANTKRILSFSYYD--LPSHLKNCLLYLSMFPEDYKIDKNHLIWIWIAEGFVP 729
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 219 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE 383
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 414 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 593
LLL G + P + + + ED+ + ++F K M +Y+ EE++++
Sbjct: 15 LLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYRKAYSSLEEKLRRFE 74
Query: 594 VY---LKGFDPEQRIKLARMTALWIG 662
V+ L D E + ++T W+G
Sbjct: 75 VFKDNLNHIDEENK----KITGYWLG 96
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 540 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 409
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 498 DTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 668
D+ ++F+ + K M Y Y + +E K L+YL F Q+I+ + + W+ G
Sbjct: 794 DSQKSFDAI-AKNMLMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIGRWVTEG 847
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 246 EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE-VIFD 395
EK+K DP GF D V A G ++ + S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 507 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 668
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G
Sbjct: 809 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEG 859
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 507 RNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 668
++F+ + K M Y Y + +E K L+YL F Q+I+ + + A W+ G
Sbjct: 807 KSFDTI-AKKMFMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEG 857
>06_01_0707 + 5136210-5136584
Length = 124
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 369 GSRVLIRPSLGTCRLRRDRHRPAP 298
G RVL+ PS GT LRR RP P
Sbjct: 70 GGRVLLSPS-GTSSLRRSHRRPPP 92
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 554 LGKNVRRGNE--KGSGLLERLRSRTAHQ 631
LG+ +RG E +GSGLLERL + H+
Sbjct: 23 LGRYTKRGKEDLRGSGLLERLGNACVHR 50
>02_04_0635 - 24646603-24647337
Length = 244
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +2
Query: 380 RSHIRCTHCWRPAAAGRFGVDGRRIAQ---DQHLHLLRQ*GYGHHAKFRTGIRETDASVQ 550
RS +R T C+ P G +A +Q + G G + TG+R +
Sbjct: 105 RSRVRGTDCYEPGTTVEVNYHGVLLASGPVEQLCARATKTGRGRAVAWGTGVRLPGFVLD 164
Query: 551 VLGKNVRRGNEKGSG 595
L +VRRG + +G
Sbjct: 165 ALVSDVRRGGVEATG 179
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 534 LMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNGCV 674
+ R Y ++K +YL F + RI R+T WI G +
Sbjct: 181 MTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEGFI 227
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 381 RHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 268
R G+ +P G RLRR RH A P +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,021,764
Number of Sequences: 37544
Number of extensions: 485045
Number of successful extensions: 1907
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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