Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_O03
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 36 0.057
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 33 0.40
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406... 31 1.2
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 30 2.1
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 29 3.7
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 29 4.9
02_03_0189 + 16182358-16182925,16183133-16183188 29 4.9
05_06_0288 + 26954222-26954446,26954995-26955124,26955221-269554... 29 6.5
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 35.5 bits (78), Expect = 0.057
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = +2
Query: 464 GLTVSGALSMALEELNNGVDLLPDVEIQLQWNDTKYDMVTSTRLITEMSCAGVAAFFGPE 643
G V A+ +A+ ++N +LP ++ + DT T E+ V A GP+
Sbjct: 51 GRAVMPAIELAVADVNADPGVLPGTKLSVITQDTNCSGFLGTMEALELLAKDVVAVLGPQ 110
Query: 644 GRCETEAI--VAQSRNLPMISYKCSDYQVSRL--PNFAR 748
I ++P++S+ SD +S L P F R
Sbjct: 111 SSSIAHVISHAVNEFHVPLVSFAASDPTLSSLEYPYFVR 149
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 151 QSIPHDTIDVPTISVYVRKKLVALQSTQIIPFRPTQNLK 35
QSIP T+ V T +VR + A+++ QI+P + T L+
Sbjct: 581 QSIPAPTVSVRTTGGHVRGNVAAVKAAQIVPTQCTDGLR 619
>04_04_0940 -
29539138-29539626,29540125-29540531,29540631-29540662,
29540809-29541086,29541164-29542515,29542616-29542874
Length = 938
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +2
Query: 464 GLTVSGALSMALEELNNGVDLLPDVEIQLQWNDTKYDMVTSTRLITEMSCAGVAAFFGPE 643
G + A+ A+ ++NN ++LP ++ L +D+ + + A GP
Sbjct: 43 GRVAAVAVLAAVNDINNDSNILPGTKLDLHMHDSSCNRFLGIVQALQFMEKDTVAIIGPL 102
Query: 644 GRCETEAI--VAQSRNLPMISYKCSDYQVSRL--PNFAR 748
+ +A ++P++S+ +D +S L P F R
Sbjct: 103 SSTTAHVLSHLANELHVPLMSFSATDPTLSSLEYPFFVR 141
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 393 SEGPASKPSAASTNTRAPCHMPSPSP 316
S GPAS PS ++T++ AP + +P P
Sbjct: 28 SSGPASAPSTSTTSSSAPLPVAAPPP 53
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 579 TMSYFVSFHCN*ISTSGSRSTPLFSSSSAIDSAPETVS 466
T+S F + TSGSRS P S SA+D A +T++
Sbjct: 13 TLSLFAVYIPPQTITSGSRSAPCASERSAVDPAVKTLA 50
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 449 LRDRQGLTVSGALS-MALEELNNGVDLLPDVEIQLQWNDTKYDMVTSTRLITEMSCAGVA 625
+ DR + S ++ MAL +N + VE +W+ + M T + G
Sbjct: 130 VNDRLRMVTSRQMTGMALHPCSNN-EKHSSVESTKKWHSSLLGMSRCTASARNLDMCGT- 187
Query: 626 AFFGPEGRCETEAIVAQSRNLPMISYKCSDYQVS 727
GP G E + R P +SY+CS+ Q++
Sbjct: 188 ---GPGGCDGVEDTQSPFRTPPSLSYRCSEQQLN 218
>02_03_0189 + 16182358-16182925,16183133-16183188
Length = 207
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 649 ATFGSEKGCYTCTTHFCDEPGG 584
A++ SEK Y C+ CD PGG
Sbjct: 111 ASWASEKQWYNCSDDSCDAPGG 132
>05_06_0288 +
26954222-26954446,26954995-26955124,26955221-26955414,
26955638-26956273
Length = 394
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 24 YRESLRFWVGRNGIICVLCKATSFLRT*TEIVGTSIVSWG 143
Y+ES R GRNG + +FL+ + +I SWG
Sbjct: 181 YQESKRKGTGRNGSTFKILSIRAFLKLNADAFADAIESWG 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,589,532
Number of Sequences: 37544
Number of extensions: 518654
Number of successful extensions: 1417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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