Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N24
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.56 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 202 PXXXGPPXPPXXXPPXXXXGPPPLRXP 282
           P    PP P    PP    G PP + P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 747 PXPGXSPLXXSPXGXPPXPXPXPLPXXPA 833
           P P   P    P G PP   P  +   PA
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISPA 68



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 217 PPXPPXXXPPXXXXGPPP 270
           P  P    PP    GPPP
Sbjct: 31  PQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/46 (26%), Positives = 13/46 (28%)
 Frame = +3

Query: 765 PLXXSPXGXPPXPXPXPLPXXPAPPXPPXXQXVAXXPXGPPXXGLP 902
           P+       P    P P P     P  P          GPP  G P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,973
Number of Sequences: 438
Number of extensions: 5371
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)