Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N23
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    68   9e-12
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    38   0.008
11_04_0003 - 11999569-11999754,12000061-12000139,12000208-120003...    29   6.8  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 68.1 bits (159), Expect = 9e-12
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = +2

Query: 89  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 268
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 269 YHQKMKVNLRNHYKNKKYKPLEFKSQE 349
             QK +  LR  YK K   PL+ + ++
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKK 87



 Score = 37.9 bits (84), Expect = 0.011
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 18/89 (20%)
 Frame = +3

Query: 246 LSHVFTLCITRR*RSILETTTKTRNTSL*NLRAKKTRAMRKALTKH-------------- 383
           ++ V T+ I+++ R+ L    K ++    +LR KKTRA+R+ LTKH              
Sbjct: 54  IARVLTV-ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSM 112

Query: 384 ----EAKIKTRKEIRKKSLFPPRVYAVKA 458
               +  +KT +E +++  FP R YA+KA
Sbjct: 113 VAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +2

Query: 77  VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 256
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 257 VY 262
            Y
Sbjct: 163 AY 164


>11_04_0003 -
           11999569-11999754,12000061-12000139,12000208-12000318,
           12000390-12000523
          Length = 169

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 25  YREFLKIL--LFKXSFRRERDRQNGQSEVF 108
           Y+EFL+IL   FK  ++R R R+N +  +F
Sbjct: 73  YQEFLRILDFAFKRYYQRGRQRKNSRERIF 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,530
Number of Sequences: 37544
Number of extensions: 208293
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)