Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N22
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    34   0.032
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   3.7  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    27   4.9  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   8.5  

>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 46  YTFFMDTLLETVRGEIAACIEKAYHTIP 129
           +++FM  ++  VR EIA C EK Y  IP
Sbjct: 160 FSYFMKIVMSMVRNEIATCAEKVYSEIP 187


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 264 SRAFFHLLNWLNRPLSMPDILR*LYKNNIF*LSMQNKHFCSILIL 398
           S A FHL+ +++RPLS  +I   +  N+   L ++N ++ SI IL
Sbjct: 125 SCAQFHLVYYMSRPLS--NIFGLIATNHSLSLLLKNNYYGSISIL 167


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = -3

Query: 390 VYYKNVYFALTIKKYYFYTIISRCL 316
           +Y+   Y   ++K Y++Y + + C+
Sbjct: 70  IYFHRFYLRFSLKNYHYYEVAATCI 94


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 340 LYNHLKMSGILNG-LLSQFSRWKNAREG 260
           LYNH K +G++ G  +SQF   +  R G
Sbjct: 219 LYNHFKQAGVVKGTAVSQFLDQRGFRYG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,010
Number of Sequences: 5004
Number of extensions: 36268
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)