Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N15
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       33   0.30 
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    30   2.8  
12_02_1174 - 26696869-26698191                                         29   3.7  
08_01_0059 - 394001-394708                                             29   6.5  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   6.5  
01_01_0963 - 7577207-7577992,7578506-7578622,7578711-7578921,757...    29   6.5  
11_01_0066 - 536281-537196,537397-537452                               28   8.6  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 19/73 (26%), Positives = 21/73 (28%)
 Frame = +1

Query: 634 PSAYVPPASXXRPXXPXXXRPPXPXXXXXXXXPXXLPXXXXXPRXXXPXPXXXVRXXPXX 813
           P  + PP +   P  P    PP P        P   P     P    P P       P  
Sbjct: 266 PWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPH-FPPLPSFYPSPPPPP 324

Query: 814 XPXPXPXSXXPXP 852
            P P P    P P
Sbjct: 325 PPPPPPPPSFPWP 337


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/59 (27%), Positives = 17/59 (28%)
 Frame = +1

Query: 670 PXXPXXXRPPXPXXXXXXXXPXXLPXXXXXPRXXXPXPXXXVRXXPXXXPXPXPXSXXP 846
           P  P   RPP          P  LP     P    P P   +   P   P P P    P
Sbjct: 73  PPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFP 131


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
 Frame = +1

Query: 631 RPSAYVPPASXXRPXXPXXX---RPPXPXXXXXXXXPXXLPXXXXX-PRXXXPXPXXXVR 798
           RP +  PP    +P  P       PP P        P   P      P+   P P   V+
Sbjct: 197 RPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVK 256

Query: 799 XXPXXXPXPXPXSXXPXP 852
                 P P P    P P
Sbjct: 257 MPRVLEPKPSPPPPSPLP 274


>08_01_0059 - 394001-394708
          Length = 235

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/69 (26%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
 Frame = +1

Query: 649 PPASXXRPXXPXXXRPPXPXXXXXXXXPXXLPXXXXXPR-XXXPXPXXXVRXXPXXXPXP 825
           PP    R   P    PP P        P   P     PR    P P   +   P     P
Sbjct: 3   PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPP 62

Query: 826 XPXSXXPXP 852
            P    P P
Sbjct: 63  APVPPPPSP 71


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/88 (22%), Positives = 23/88 (26%)
 Frame = +1

Query: 589  PPXXXXXXXXXXDXRPSAYVPPASXXRPXXPXXXRPPXPXXXXXXXXPXXLPXXXXXPRX 768
            PP          D  P   +P      P      +PP P        P   P     P  
Sbjct: 1123 PPLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPP---PPPPLSPSL 1179

Query: 769  XXPXPXXXVRXXPXXXPXPXPXSXXPXP 852
              P P   +   P   P P P    P P
Sbjct: 1180 PPPPPPPPLPSGPPPQPAPPPLPIQPPP 1207


>01_01_0963 -
           7577207-7577992,7578506-7578622,7578711-7578921,
           7579406-7579442,7580781-7580902,7581292-7581500
          Length = 493

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 463 GNGAPEAGRDATAEDPAMDSTKXXXKGPWNTP 558
           GNG P AG D + ++P   S      G WNTP
Sbjct: 251 GNGGP-AGTDGSRQNPEETSFFRADGGCWNTP 281


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/73 (23%), Positives = 18/73 (24%)
 Frame = +1

Query: 634 PSAYVPPASXXRPXXPXXXRPPXPXXXXXXXXPXXLPXXXXXPRXXXPXPXXXVRXXPXX 813
           PS   PP S   P  P    PP P            P          P P       P  
Sbjct: 218 PSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPPLPRATVTPTP 277

Query: 814 XPXPXPXSXXPXP 852
              P   +  P P
Sbjct: 278 TTPPSTATTTPIP 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,911,366
Number of Sequences: 37544
Number of extensions: 212723
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)