Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N12
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    46   5e-06
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   2.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   4.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   6.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   8.2  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   8.2  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +2

Query: 452 YEEWFEKLELPDTLASWFSITELHVWLLMVR 544
           +E W++K E+P T  SWF IT+LH+W+L  R
Sbjct: 123 FEFWYQKCEIPMTFQSWFQITQLHLWILHTR 153


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect(2) = 2.1
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +2

Query: 503 FSITELHVWLLMVRYMAEDIAHTAKEKKTYVKGDGHFVRNCIVEALWADVSSRIKLLEGA 682
           FS+++     L +    ED+     E   Y+K + H +R+    +L+   S +I+ LE  
Sbjct: 377 FSVSDNSPLSLALNQYMEDLLVPFIEVDDYLKREEHSLRSLFRLSLYKYTSYKIR-LETP 435

Query: 683 NPSIAKKQVSELSEQFQAALG 745
            P + +  ++ L     A  G
Sbjct: 436 EPGLLRSLMTPLQGNMVAPTG 456



 Score = 20.6 bits (41), Expect(2) = 2.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 776 NFSSSNMEKIYSF 814
           N S  N EK+YSF
Sbjct: 496 NHSHLNSEKVYSF 508


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 638  LWADVSSRIKLLEGANPSIAKKQVSELSEQFQAALGS 748
            LW +VS R  + + + PS     V E  E+++ ALG+
Sbjct: 1256 LWHEVSVRAGVAQTSKPSFDAPLVLEAIEKYKNALGA 1292


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +2

Query: 200 LKETKMLNSRV-IAQVLLQQRH-KIRNICNPGIIKCNKIYREHSTVAAE 340
           L E+K+ NS++   Q L+ +R  +I N+   GI + N+I+R+ ST+  E
Sbjct: 155 LTESKISNSQLEYQQRLINERQGEIENLTQ-GINELNEIFRDLSTIINE 202


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 705 CFFAIDGFAPSNSLI 661
           C+F  D FAPSNSL+
Sbjct: 499 CYFCNDIFAPSNSLV 513


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 349 IAIFSSNCAVFSINLIALDDSRVTNISNFVSLL*QYLGYYS-AVQHFCFFEII 194
           I  FS   +   +N +++    +  I  FVS   QYLG YS + Q F    +I
Sbjct: 60  ICAFSITGSGLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVI 112


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = +2

Query: 407 LTGYFLYESIHANIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKK 586
           L G +    +H  +V +  +EK ++   L      T      L  RYM + + +  +E  
Sbjct: 185 LMGLYAIGILHG-LVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESL 243

Query: 587 TYVKGDGHFVRNCIVEALWAD 649
             +K  G +V    +  L+A+
Sbjct: 244 PTLKSSGQYVSKEDITELFAE 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,212
Number of Sequences: 5004
Number of extensions: 70283
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)