Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_N12
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0161 + 2401945-2402218,2402469-2402563,2402936-2403070,240... 30 2.1
04_01_0572 + 7404842-7405502,7405581-7406143,7406338-7406479,740... 30 2.8
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 30 2.8
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 3.8
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910 29 5.0
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706... 29 6.6
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871 29 6.6
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 8.7
>09_01_0161 +
2401945-2402218,2402469-2402563,2402936-2403070,
2403176-2403865
Length = 397
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 506 SITE-LHVWLLMVRYMAEDIAHTAKEKKTYVKGDGHFVRNCIVEALWADVSSRIKLLEGA 682
++TE LH + + RY++ED+ A++++ ++ G + N ++ +AD +
Sbjct: 276 TVTEYLHEFNRLARYVSEDVCTNAEKQEKFLAGLDDELTNQLISGDYADFEKLVDKAIRQ 335
Query: 683 NPSIAKKQVSELSEQFQAALGS 748
K + QF+A GS
Sbjct: 336 EDQRNKMDRKRKAAQFRAHQGS 357
>04_01_0572 +
7404842-7405502,7405581-7406143,7406338-7406479,
7406605-7407436,7407546-7407729
Length = 793
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 581 KKTYVKGDGH-FVRNCIVEALWADVSSRIKLLEGANPSIAKKQVSELSEQFQAALGSL 751
++T +GD FV + E LW + L G + + + +++EQFQ+ G L
Sbjct: 132 RRTRARGDHESFVPDSEKEMLWTTMLETFTLPAGTEDKVKRWTLKKMAEQFQSFKGDL 189
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 581 KKTYVKGDGH-FVRNCIVEALWADVSSRIKLLEGANPSIAKKQVSELSEQFQAALGSL 751
++T +GD FV + E LW + L G + + + +++EQFQ+ G L
Sbjct: 231 RRTRARGDHESFVPDSEKEMLWTTMLETFTLPAGTEDKVKRWTLKKMAEQFQSFKGDL 288
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 626 IVEALWADVSSRIKLLEGANPSIAKKQVSELSEQFQAALGS 748
++ L ADVS KLL+ AN SI ++ S +E+F + S
Sbjct: 403 VIGELKADVSGIPKLLQAANGSITRRNSSFGTEEFSEDINS 443
>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
Length = 1155
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 443 NIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAHTAKEKK 586
++ E W+ + +LP+ L S+ EL + + EDI H +K
Sbjct: 1023 SLTLERWYNQAQLPNWLGQLVSLKELKINRFEMNESQEDIKHLMSLQK 1070
>12_01_0774 +
7063465-7064011,7065183-7065791,7067905-7068464,
7069411-7069530
Length = 611
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 551 AEDIAHTAKEKKTYVKGDGHFVRNCIVEALWADVSSRI 664
A++I E K +G GHFVRN + A SRI
Sbjct: 165 AQNIHRDPHENKEGAQGQGHFVRNRVAIARREQYESRI 202
>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
Length = 398
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 506 SITE-LHVWLLMVRYMAEDIAHTAKEKKTYVKGDGHFVRNCIVEALWADVSSRIKLLEGA 682
++TE LH + + RY ED+ A++++ ++ G + N ++ +AD +
Sbjct: 123 TVTEYLHEFNRLARYEPEDVRTDAEKQEKFLAGLDDELTNQLISGDYADFEKLVDKAIRQ 182
Query: 683 NPSIAKKQVSELSEQFQAALGS 748
K + QFQ+ GS
Sbjct: 183 EDQCNKMDRKRKTAQFQSNQGS 204
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 647 DVSSRIKLLEGANPSIAKKQVSELSEQFQAALG 745
D+ +R ++L+G P + K+VSEL+ + + G
Sbjct: 230 DIKARYEILQGEKPEGSSKKVSELNVKMEDVYG 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,419,840
Number of Sequences: 37544
Number of extensions: 400251
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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