Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N11
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         31   1.6  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   5.0  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     29   6.6  
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    29   6.6  
01_06_0509 - 29921224-29924589                                         29   6.6  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.7  
03_04_0061 - 16949038-16950006                                         28   8.7  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -2

Query: 507 GGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRL 328
           GG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR 
Sbjct: 82  GGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKRR 137

Query: 327 VS 322
            S
Sbjct: 138 AS 139


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 709 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 611
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -1

Query: 808 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 629
           RN + AN    A+S    A     N  S       S      SSSVA   PP + L ST 
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262

Query: 628 YIPRSANPVTS 596
            +PR  NP+ +
Sbjct: 263 PVPR--NPIAA 271


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 345 SRGKRLVSL*SCQXSPPLT*ASIFVMLVQGGGAYGKTPAT 226
           SRGK L+S  + +  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 798 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 676
           CL  ++PP PA +C     LPD +  T+   +  F R      VLL
Sbjct: 46  CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 823 ILFSARNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQE 644
           I   ++   L N++ + TS  ++  SR+ ++    +W Q  + T   S ++A    PLQ 
Sbjct: 736 IAIGSKRRRLKNEEAS-TSRDIYIDSRSHSATMNSDWRQNLSGTNLLSINLAAFEKPLQN 794

Query: 643 L 641
           L
Sbjct: 795 L 795


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 438 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 337
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 312 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 428
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,516,335
Number of Sequences: 37544
Number of extensions: 609779
Number of successful extensions: 1914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)