Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N11
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.64 
U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    28   7.8  
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    28   7.8  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 317 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 439
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical
           protein B0207.2 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +2

Query: 446 VGISVRCRSFAPSWAVCTNPPXQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRPRY 625
           VG  + C     +   C NP    + C L  +Y  E  PV  D +     TG R    R+
Sbjct: 21  VGTMLACALCIANPGACANPMWYTNFCLLLHDYMQEMYPVHPDGTSSPKMTGLRAQMQRH 80


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +1

Query: 43  RFCXSSGFLAH*LAALGRSACGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKR 222
           RFC  SG +A   + L   A   R Q T+    G  +N+G+   +  E+K         R
Sbjct: 477 RFCRQSGRIAVSRSLLQLRANKRRQQSTEGDASGVRKNEGLVARKERERKELMLFSKRSR 536

Query: 223 PRCWRFSIGSAPLXEHHKNRRSSQRWR 303
           P+     + S+       +  SS+R R
Sbjct: 537 PQTCFMGVKSSGRDSSMSSTTSSERER 563


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 493 HSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 320
           H  AW+ R  P    ++ +  K  ++ K E + G     G+E+       +G+T   F
Sbjct: 96  HDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,935,502
Number of Sequences: 27780
Number of extensions: 439641
Number of successful extensions: 1050
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)