Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N11
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 805  YAQKKGSQEDPLIFST 852
            Y   +G Q+DP+IFST
Sbjct: 1122 YMNLEGEQKDPVIFST 1137


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 323 DTRRFPLEAPSCALLFRPCR 382
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 SGISSLKGGNTVIHRIR 160
           +G+  + G NTVIH+ R
Sbjct: 128 TGVDDILGNNTVIHQPR 144


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 820 GSQEDPLIFSTGLTL 864
           G++ +PL+ S GLTL
Sbjct: 43  GNESEPLVLSFGLTL 57


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 429 KRHASRREKGGQVSGKRQGRNRRAH 355
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -2

Query: 834 IFLRSFFLRVICCLQTKKPPLPAVVCLPDQELPTLFPKVTGFSRAQIPNT 685
           I +   + R+ C  Q     + AV  LPD  +   F +    ++   P T
Sbjct: 206 IVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVHATKPPKPQT 255


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 STLKSEVAKXDRTIKIPGVSPWKLPRALS 365
           S++  +VA   R   IP +SP    +ALS
Sbjct: 79  SSVSLQVANLLRLFHIPQISPASTAKALS 107


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 285 LKSEVAKXDRTIKIPGVSP 341
           L+SE+A+ +  IK+  +SP
Sbjct: 175 LRSELAQCESNIKVISISP 193


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 STLKSEVAKXDRTIKIPGVSPWKLPRALS 365
           S++  +VA   R   IP +SP    +ALS
Sbjct: 169 SSVSLQVANLLRLFHIPQISPASTAKALS 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,996
Number of Sequences: 438
Number of extensions: 6529
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)