Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N08
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.17 
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   1.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.6  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   4.8  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = -1

Query: 438 IKFIFIYEIKQNTVIFFKIVRYALYLKYLKWCNITIITKFVYKKVWRHYWGCNCIGIMII 259
           + FIFIY    N ++F+ I+    +  Y  +  IT   +   KK  R     N      I
Sbjct: 14  LPFIFIYLSVANKIMFYCILNERAFKHYKTYRRITDCPEIKNKKSRRK----NQRNSSSI 69

Query: 258 SHSAPSRFSVFTDLSLFTPRYNCEP 184
             S P++FS++  +  F   + C P
Sbjct: 70  GLSNPNKFSIYIYIYFFFYSFLCSP 94


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 227 SRIFLCLHQGIIVNPIKIIVNATKTAVKMSVCQNSSILNYLG 102
           SR++    + +I++ I I + +    +K+S  QN  ++NYLG
Sbjct: 498 SRVYRLCTKSLILSEINIQIGSGLFGIKVSNDQNYLLVNYLG 539


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 446 NGYLMESKCY---FYITQIKNEIPKIILRCVSSLFIFYCIYY 562
           + Y  +  C+   F +T   N  PK +LR  SSL++FY + Y
Sbjct: 835 DNYKADHYCFTLDFILTDCVNS-PKPLLRRASSLWLFYIVRY 875


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 256 AYNHDTYTIASPVMPPYFFVNELS 327
           A+ +DT+T  + V+PP FF N  S
Sbjct: 335 AFIYDTFTKRNAVLPPPFFKNRSS 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,949
Number of Sequences: 5004
Number of extensions: 49724
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)