Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N08
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015937-1|AAH15937.1|  479|Homo sapiens poly(A) binding protein...    31   7.5  
BC005295-1|AAH05295.1|  400|Homo sapiens poly(A) binding protein...    31   7.5  
AF013758-1|AAC39697.2|  479|Homo sapiens polyadenylate binding p...    31   7.5  
BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.       30   9.9  
AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant p...    30   9.9  
AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1 ...    30   9.9  
AF192523-1|AAF20397.1|  724|Homo sapiens truncated Niemann-Pick ...    30   9.9  
AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like pr...    30   9.9  

>BC015937-1|AAH15937.1|  479|Homo sapiens poly(A) binding protein
           interacting protein 1 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 217 KIREDRESTWGRMAYNHDTYTIASPVMPPYFFVNELSY 330
           K+ E R S WGR+ +   TY  A+P   P +F+NE ++
Sbjct: 368 KLVELRSSNWGRV-HATSTYREATPENDPNYFMNEPTF 404


>BC005295-1|AAH05295.1|  400|Homo sapiens poly(A) binding protein
           interacting protein 1 protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 217 KIREDRESTWGRMAYNHDTYTIASPVMPPYFFVNELSY 330
           K+ E R S WGR+ +   TY  A+P   P +F+NE ++
Sbjct: 289 KLVELRSSNWGRV-HATSTYREATPENDPNYFMNEPTF 325


>AF013758-1|AAC39697.2|  479|Homo sapiens polyadenylate binding
           protein-interacting protein-1 protein.
          Length = 479

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 217 KIREDRESTWGRMAYNHDTYTIASPVMPPYFFVNELSY 330
           K+ E R S WGR+ +   TY  A+P   P +F+NE ++
Sbjct: 368 KLVELRSSNWGRV-HATSTYREATPENDPNYFMNEPTF 404


>BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 139 LILTAVFVALTIILIGFTIIPWCKQRKIREDRESTWGRMAYNHDTYTI 282
           +IL +VF  +TI+L+GF + P   + K+ + ++ T      +  T+T+
Sbjct: 289 IILCSVFAVVTILLVGFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTL 336


>AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant
           protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 139 LILTAVFVALTIILIGFTIIPWCKQRKIREDRESTWGRMAYNHDTYTI 282
           +IL +VF  +TI+L+GF + P   + K+ + ++ T      +  T+T+
Sbjct: 289 IILCSVFAVVTILLVGFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTL 336


>AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1
           protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 139 LILTAVFVALTIILIGFTIIPWCKQRKIREDRESTWGRMAYNHDTYTI 282
           +IL +VF  +TI+L+GF + P   + K+ + ++ T      +  T+T+
Sbjct: 289 IILCSVFAVVTILLVGFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTL 336


>AF192523-1|AAF20397.1|  724|Homo sapiens truncated Niemann-Pick
           C1-like protein 1 protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 139 LILTAVFVALTIILIGFTIIPWCKQRKIREDRESTWGRMAYNHDTYTI 282
           +IL +VF  +TI+L+GF + P   + K+ + ++ T      +  T+T+
Sbjct: 289 IILCSVFAVVTILLVGFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTL 336


>AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like
           protein 1 protein.
          Length = 1359

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 139 LILTAVFVALTIILIGFTIIPWCKQRKIREDRESTWGRMAYNHDTYTI 282
           +IL +VF  +TI+L+GF + P   + K+ + ++ T      +  T+T+
Sbjct: 289 IILCSVFAVVTILLVGFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTL 336


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,579,659
Number of Sequences: 237096
Number of extensions: 1691333
Number of successful extensions: 2001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)