Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N08
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-4|CAB01227.1|  139|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical p...    29   5.9  

>Z77666-4|CAB01227.1|  139|Caenorhabditis elegans Hypothetical
           protein K08E7.4 protein.
          Length = 139

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +2

Query: 110 NLICLNFGKHSF*LQFLLH*Q*S*LGSQLYLGVNKERSVKTENLLGAEWLIIMIPIQLHP 289
           NL  LNF +H F LQFL++     L +  +L +   + + +E  +    +I+++ + + P
Sbjct: 12  NLRTLNFREHFFPLQFLIYKASENLQNSYFLTLQDSKPLGSEKRIMISQIILLLTLNILP 71

Query: 290 Q*CLH 304
              +H
Sbjct: 72  FVLVH 76


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
            R09E10.5 protein.
          Length = 1459

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/51 (25%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 127  FWQTLILTAVFVALTIILIGFTIIPWC-KQRKIREDRESTWGRMAYNHDTY 276
            +++ L + A  V + I+++   ++ WC K++K++E R  + G  AY+++ +
Sbjct: 1345 YFKWLAVIAGIVGIIIVILLIFLVFWCIKRKKLQESRNYS-GTAAYSNNAF 1394


>Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical
           protein C48B4.2 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 79  FLIATEDIPK*FNMLEFWQTLILTAVFVALTIILI 183
           F++     P  F  + FW +L+L+  F+A+ I LI
Sbjct: 307 FILFRGSKPSRFYTVSFWVSLVLSGFFIAICITLI 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,838
Number of Sequences: 27780
Number of extensions: 272169
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)