Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_N06
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 225 7e-60
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 169 6e-43
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 160 2e-40
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 157 2e-39
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 147 2e-36
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 132 5e-32
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 130 2e-31
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 117 2e-27
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 95 2e-20
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 91 2e-19
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 81 2e-16
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 80 4e-16
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 79 6e-16
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 76 8e-15
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 75 1e-14
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 74 3e-14
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 67 4e-12
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 53 5e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 7e-06
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 44 4e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 42 1e-04
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.6
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 3.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 6.4
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 26 8.5
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 225 bits (550), Expect = 7e-60
Identities = 120/175 (68%), Positives = 136/175 (77%), Gaps = 3/175 (1%)
Frame = +3
Query: 258 NGAPQTKVC-QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD-TT 431
N AP+ V KLVLLG+SAVGKSSLVLRFVK QF +Y+ESTIGAAFLTQ + D+ T+
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 432 VKFEIWDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVI 611
VK EIWDTAGQERY SLAPMYYR A AIVVYDIT + +AK+W+KELQRQA IVI
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 612 ALAGNKSDLA-AKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLP 773
ALAGNK DLA +R VE +A+AYA E LLF ETSAKTA NVN++F AIA KLP
Sbjct: 124 ALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 169 bits (410), Expect = 6e-43
Identities = 80/161 (49%), Positives = 108/161 (67%)
Frame = +3
Query: 288 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 467
FK VL+G+S VGKS+L++RF + +F+ +STIG F T+ I D+ +K +IWDTAGQE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 468 RYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAK 647
RY ++ YYRGA A++VYDIT Q +F W+KEL+ A +IVI L GNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHL 130
Query: 648 RMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
R V EEAQA+A EN L F+ETSA A NV + F + ++
Sbjct: 131 RAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 160 bits (389), Expect = 2e-40
Identities = 75/163 (46%), Positives = 108/163 (66%)
Frame = +3
Query: 285 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 464
+FKLV LGE +VGK+SL+ RF+ QF ++TIG FL++ + +D TV+ ++WDTAGQ
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 465 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAA 644
ER+ SL P Y R + AI+VYDITN ++F + W+++++ + ++I L GNK+DLA
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLAD 130
Query: 645 KRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLP 773
KR V EE + A E ++ METSAK NV +F IA LP
Sbjct: 131 KRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLP 173
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 157 bits (382), Expect = 2e-39
Identities = 72/161 (44%), Positives = 104/161 (64%)
Frame = +3
Query: 288 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 467
FKL+L+G+S VGKS L+LRF + E STIG F + + TVK +IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 468 RYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAK 647
R+ ++ YYRGA I+VYD+T+QD+F K W++E+ R A + L GNKSD+ K
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 648 RMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
++VE+ A+ +AD + F+ETSAK + NV FL ++ ++
Sbjct: 129 KVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 147 bits (356), Expect = 2e-36
Identities = 67/160 (41%), Positives = 102/160 (63%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
KL+L+G+S VGKS L+LRF + F +TIG F + I D +K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKR 650
+ ++ YYRGA +++YD+T++ +F + W +++ AS ++ L GNK D +R
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQR 130
Query: 651 MVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
V FE+ QA ADE G+ F+E SAKT +NV++ F +A ++
Sbjct: 131 QVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 132 bits (320), Expect = 5e-32
Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 5/165 (3%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRF----DDTTVKFEIWDTA 458
K+VL G S GKS L+ RFVK Q+ + T+G F ++ I +K +IWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 459 GQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDL 638
GQE++ S+A YYRGA A++VYD+TN+D+F +W+ +++ A +I + LAG+KSDL
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDL 130
Query: 639 AAKRMVEFEEAQAYADENGLLFM-ETSAKTAMNVNDIFLAIANKL 770
+R V EEA + E + ETS+ T NV + FL++ + +
Sbjct: 131 QNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTI 175
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 130 bits (315), Expect = 2e-31
Identities = 69/163 (42%), Positives = 100/163 (61%), Gaps = 6/163 (3%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
K+++LGES VGK+S++ ++V +F + ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPS----IVIALAGNKSDL 638
+ SL +YRGA ++VYD+ N +F +W E QASPS L GNK D+
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 639 -AAKRMVEFEEAQAYADENG-LLFMETSAKTAMNVNDIFLAIA 761
KRMV +A A+ G + + ETSAK A+NV + F +A
Sbjct: 130 EEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVA 172
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 117 bits (282), Expect = 2e-27
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 7/164 (4%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
K+V+LG+S VGK+ L+ +FV +F ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASP---SIVIALAGNKSDL- 638
+ SL +YRGA ++VY++ N +F +NW +E Q S + + GN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 639 AAKRMVEFEEAQAYADE---NGLLFMETSAKTAMNVNDIFLAIA 761
A+KR V A Y + ++ E SAK NV D+F ++
Sbjct: 130 ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVS 173
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 94.7 bits (225), Expect = 2e-20
Identities = 48/167 (28%), Positives = 92/167 (55%), Gaps = 1/167 (0%)
Frame = +3
Query: 273 TKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWD 452
T + ++KLV++G+ VGKS+L ++ ++ F + + TI ++ + D ++ D
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLD 62
Query: 453 TAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQR-QASPSIVIALAGNK 629
TAGQE Y ++ Y R + ++VY+IT++ +F + +++ R + + + L NK
Sbjct: 63 TAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANK 122
Query: 630 SDLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
DL A+R+V E + A L++ETSAK +NV + F ++ +
Sbjct: 123 CDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 91.5 bits (217), Expect = 2e-19
Identities = 54/168 (32%), Positives = 89/168 (52%)
Frame = +3
Query: 267 PQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEI 446
PQ V FKLVL+G+ GK++ V R + G+F + +T+G + + F +
Sbjct: 4 PQN-VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNV 62
Query: 447 WDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGN 626
WDTAGQE+ L YY Q I+++D+T++ T+ +W ++L R +I I L GN
Sbjct: 63 WDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGN 121
Query: 627 KSDLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
K D+ +++ +A + + L + + SAK+ N FL +A KL
Sbjct: 122 KVDVKERKVK--AKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 81.0 bits (191), Expect = 2e-16
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
K+ ++G+S++GK+SL++ +V+G F E T+G F+ + I +T + F IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSD--LAA 644
+ ++ PM A + + ++D++ + T K W ++ R + + V L G K D +
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQ-ARGFNKTAVPILIGTKYDHFMTF 130
Query: 645 KRMVEFE---EAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
R + E +A+ YA + S ++NV IF + K+
Sbjct: 131 PREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKV 175
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 80.2 bits (189), Expect = 4e-16
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
++ +LG +VGKSSL +++V+ F E TI F ++ I++ EI DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWV-KELQRQASPSIVIALAGNKSDLAAK 647
Y L + G ++VY IT++ +F K K L + + I + GNKSDL +
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 648 RMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
R V EE +A A+E + E SA+ NV F I +++
Sbjct: 127 RAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEI 167
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 79.4 bits (187), Expect = 6e-16
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
K+V+LG+ A GK+SL+ F KG F + E TI ++ I D +++ +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDLAA- 644
Y L + Y ++ + + ++D+ W+ E+ P + + L K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDLRGA 132
Query: 645 -------KRMVEFEEAQAYADE-NGLLFMETSAKTAMNVNDIFLAIA 761
+++++EE A A + N + ++E SAK VN+ F A
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAA 179
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 75.8 bits (178), Expect = 8e-15
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Frame = +3
Query: 270 QTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIW 449
Q++ + KLV++G+ A GK+SL+ F G F T+ +++ R D +V+ +W
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALW 61
Query: 450 DTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGR-AKNWVKELQRQASPSIVIALAGN 626
DTAGQE Y L PM Y A +V + I + D+ + W++E+ P++ L G
Sbjct: 62 DTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI-NTLCPNVPFILVGM 120
Query: 627 KSDLAA------------KRMVEFEEAQAYADENGL-LFMETSAKTAMNVNDIFLA 755
K+DL + + V+ ++A+ A G +ME S+ T V+D+F A
Sbjct: 121 KADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEA 176
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 74.9 bits (176), Expect = 1e-14
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
KLV++G+ A GK+ L++ F KG F E T+ ++ + D ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL--- 638
Y L P+ Y + ++ + + ++ + W+ E+ S ++ I L G K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-NLPILLVGCKVDLRND 125
Query: 639 ---------AAKRMVEFEEAQAYADENGLL-FMETSAKTAMNVNDIF 749
+++ + FEE Q A + G ++E SAK VN++F
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVF 172
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 73.7 bits (173), Expect = 3e-14
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
KLV++G+ A GK+ L++ F KG F E T+ ++ + D V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL--- 638
Y L P+ Y + ++ + + + D+ + W+ E+ S S+ I L K+DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCS-SLPILLVACKADLRND 125
Query: 639 ---------AAKRMVEFEEAQAYADENGLL-FMETSAKTAMNVNDIF 749
+ V EE QA A + G ++E SAKT V ++F
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVF 172
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 66.9 bits (156), Expect = 4e-12
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTV-KFEIWDTAGQE 467
KLV++G+ GK+ L++ F G F E T+ ++T ++ V + +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 468 RYHSLAPMYYRGAQSAIVVYDITNQDTFGR-AKNWVKELQRQASPSIVIALAGNKSDLAA 644
Y L P+ Y + ++ + I + + W E+Q P I L G K+DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPRTPIVLVGLKADLRK 134
Query: 645 KR------------MVEFEEAQAYADENGLLFMETSAKTAMNVNDIF 749
R V +++AQ+ A ++E SAK VN++F
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 53.2 bits (122), Expect = 5e-08
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 470
K V++G+ AVGK+ L++ + +F T+ + + D ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 471 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAK-NWVKELQRQASPSIVIALAGNKSDL 638
Y L P+ Y +V + +T+ +F K W E+ P + + G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDL 119
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 46.0 bits (104), Expect = 7e-06
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 285 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 464
+ ++++LG A GK++++ + Q T+G F + + + + +KF +WD GQ
Sbjct: 21 EMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVG--FNVETVTYKN--IKFNVWDVGGQ 75
Query: 465 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKEL--QRQASPSIVIALAGNKSDL 638
++ L Y+ G + I V D + + A+ + + R+ +++ LA NK DL
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLA-NKQDL 134
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 43.6 bits (98), Expect = 4e-05
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Frame = +3
Query: 285 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 464
+ +++LLG GK++++ + +E T G T + ++F IWD GQ
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLLNEDVNEVSP-TFGFQIRTLEVE----GLRFTIWDIGGQ 70
Query: 465 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKEL--QRQASPSIVIALAGNKSD- 635
+ + Y+ ++ I V D + +N ++EL + + + ++ LA NKSD
Sbjct: 71 KTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLA-NKSDV 129
Query: 636 ---LAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKL 770
L+++ + + Y + +F SA T +N+ D +AN L
Sbjct: 130 SGALSSEEISKILNISKYKSSHWRIF-SVSALTGLNIKDAISWLANDL 176
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 41.9 bits (94), Expect = 1e-04
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Frame = +3
Query: 285 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 464
+ +++++G A GK++++ + G+ TIG F + + + + + F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYRN--ISFTVWDVGGQ 71
Query: 465 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKE-LQRQASPSIVIALAGNKSDL 638
++ L Y++ Q I V D +++ A ++ L ++ + NK DL
Sbjct: 72 DKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.6
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +3
Query: 291 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ--AIRFDDTTVKFEIWDTAGQ 464
K++L+G S GKSS+ V + +GA + +RF V +WD GQ
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 465 ERY-----HSLAPMYYRGAQSAIVVYDITNQD 545
E + + +R Q I V+D+ +++
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 355 PLTNRSTSEDLPTADSPNNTSLN 287
P N TS+DL DSPN + +N
Sbjct: 376 PSENSDTSDDLTKVDSPNKSLVN 398
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 294 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT----VKFEIWDTAG 461
+V+ GE+ GKS+ V++F+ + E + TQ R + V FE T G
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVG 655
Query: 462 QERYHSL 482
+E +S+
Sbjct: 656 KEVGYSV 662
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 431 GGVVESNGLGEERSPDGAFLVLVKLSLDESE 339
G +VE+NG+GE+ S F L KLS+ +E
Sbjct: 428 GSIVETNGIGEKMS----FSPLKKLSIPPTE 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,087
Number of Sequences: 5004
Number of extensions: 65344
Number of successful extensions: 237
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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