Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N05
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...   167   2e-42
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    34   0.023
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   3.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   6.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.2  

>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score =  167 bits (406), Expect = 2e-42
 Identities = 85/186 (45%), Positives = 123/186 (66%), Gaps = 6/186 (3%)
 Frame = +2

Query: 281 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGNNGGD 460
           L+ S A ALD +L +   FS+DQLMELAGLSV+ A+ + +PPS +S  LI CGPGNNGGD
Sbjct: 6   LSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65

Query: 461 GLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDT---KDLNNEYK 631
           GLVAARH+  +GY  +V+YPK +   LY+ L +Q    ++ ++ K  D+     L  + K
Sbjct: 66  GLVAARHLWQYGYKPTVYYPKPSSPELYKRLCKQLDDLDIPVV-KSHDSNHFSQLLRDSK 124

Query: 632 VLVDALFGFXFKPPVREELKPALDALIDSNLPICSVDIPSGWDVEKGPXEGRALK---PA 802
           ++VD++FGF FK PVR+     L A+++S + + SVD PS W++++GP +   LK   P 
Sbjct: 125 LVVDSIFGFSFKGPVRDPFGSILAAIVESKIKVLSVDAPSSWEIDEGPQKEGPLKDFDPD 184

Query: 803 LLISLS 820
            LISL+
Sbjct: 185 TLISLT 190


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +2

Query: 614 LNNEYKVLVDALFGFXFKPPVREELKPALDALIDSNLPICSVDIPSGWDVEKGPXEGRAL 793
           L +  +++VD L GF   P + +     +    D N+ I SVDIPSG+ V+K   +  A+
Sbjct: 335 LTSPIELVVDVLTGFH--PSIDKNSHALIQWANDLNVLILSVDIPSGYTVQK---KNTAI 389

Query: 794 KPALLISL-SCT*AMRQTXVLKE 859
            P   ++L + T  + Q  ++K+
Sbjct: 390 LPKWTLALGAVTTTLAQAALVKQ 412


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 305 VLPLLTD*GTASQYCIDSYCSS*FRCYT 222
           VLP LT+ G  S  C    C S ++CY+
Sbjct: 394 VLPFLTNGGCYSYICRSRSCPSKYQCYS 421


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 196 CFNIACSKTV*HRNYDEQYESMQYCDAVPQ 285
           C  I+C     +  Y  QY S  YCDA  Q
Sbjct: 395 CNEISCDGITANGTYPGQYGSYSYCDAKQQ 424


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 169 LRRFFYCFSFTNNSSFVVWFQ 107
           +R   + FSF N++ ++VWF+
Sbjct: 56  VRECLFLFSFQNDNEYLVWFK 76


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 237 VPMLYSFATRNIKALPNNLYNNI 169
           +P+L S AT NI+  P++ YNNI
Sbjct: 96  IPILNS-ATSNIRLTPSDTYNNI 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,593
Number of Sequences: 5004
Number of extensions: 71979
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)