Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N05
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical ...   157   7e-39
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protea...    29   5.8  
L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protea...    29   5.8  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC024830-7|AAV34782.1|  580|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical
           protein Y18D10A.3 protein.
          Length = 348

 Score =  157 bits (382), Expect = 7e-39
 Identities = 81/184 (44%), Positives = 112/184 (60%), Gaps = 3/184 (1%)
 Frame = +2

Query: 278 YLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGNNGG 457
           ++ Q  AA +D+ LFT+Y F V+QLMELAGL+ A AIA  +P S   +  ++CGPGNNGG
Sbjct: 125 FIGQKLAAQIDEQLFTKYGFKVEQLMELAGLAAAQAIAAHYPKS---NVAVLCGPGNNGG 181

Query: 458 DGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKLPDTKDLNNEYKVL 637
           DG V ARH+Q FG+  S+ YPK +   L ++L+ QC   ++ I   LP        + ++
Sbjct: 182 DGFVCARHLQQFGFTPSIVYPKESRNELMKSLVVQCETSSIPITATLPTNL---QAFPLI 238

Query: 638 VDALFGFXFKPPVREELKPALDALIDSNLPICSVDIPSGWDVEKGPXEGR---ALKPALL 808
           VDALFGF F PP RE     L  +  S + + S+D+PSGWDVE G   G     + P  +
Sbjct: 239 VDALFGFSFHPPTREPFTEMLKTVRASGIHVFSIDVPSGWDVELGAPSGNDDDVIHPHSV 298

Query: 809 ISLS 820
           ISL+
Sbjct: 299 ISLT 302


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 371 SVASAIAKVFPPSTHSSALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKRT 529
           S A  I  +     ++   +VCG G NGG  + A RH    GY     Y  +T
Sbjct: 191 SNAKTILSISADDINACCGMVCGNGCNGGYPIEAWRHYVKKGYVTGGSYQDKT 243


>U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protease
           protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 371 SVASAIAKVFPPSTHSSALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKRT 529
           S A  I  +     ++   +VCG G NGG  + A RH    GY     Y  +T
Sbjct: 19  SNAKTILSISADDINACCGMVCGNGCNGGYPIEAWRHYVKKGYVTGGSYQDKT 71


>L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protease
           protein.
          Length = 133

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 371 SVASAIAKVFPPSTHSSALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKRT 529
           S A  I  +     ++   +VCG G NGG  + A RH    GY     Y  +T
Sbjct: 19  SNAKTILSISADDINACCGMVCGNGCNGGYPIEAWRHYVKKGYVTGGSYQDKT 71


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 581  NIIDKLPDTKDLNNEYKVLVDALFGFXFKPPVREELKPALDALIDSNLPICSVDIPSG 754
            NI+  + DT+ L    +V V         P VRE+L+P +D LID  +   S+++  G
Sbjct: 1151 NIMRSVEDTEYLLLLAEVKVKLFEEIDVNPRVREQLRPKID-LIDLYMAADSMNVAKG 1207


>AC024830-7|AAV34782.1|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8b protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = +2

Query: 218 KLYNIGTMTSSMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKV 397
           +LY  G    ++ + N +  YLN  +    D  L    KF    ++ +  L+  SA  + 
Sbjct: 170 RLYGTGADDVTLRKINILDSYLNTPDKGNSDTPLHFASKFGKIGVVRV--LTENSATDRT 227

Query: 398 FPPSTHSSALIVCGPGNNGGDGLVAAR--HMQLFGYNVSVH 514
               +  SAL   G    G D  +  R  H+ + G+ V +H
Sbjct: 228 LLNKSGKSALDCAGERYTGEDKDMVQRDIHLAIEGFYVFLH 268


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = +2

Query: 218 KLYNIGTMTSSMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKV 397
           +LY  G    ++ + N +  YLN  +    D  L    KF    ++ +  L+  SA  + 
Sbjct: 193 RLYGTGADDVTLRKINILDSYLNTPDKGNSDTPLHFASKFGKIGVVRV--LTENSATDRT 250

Query: 398 FPPSTHSSALIVCGPGNNGGDGLVAAR--HMQLFGYNVSVH 514
               +  SAL   G    G D  +  R  H+ + G+ V +H
Sbjct: 251 LLNKSGKSALDCAGERYTGEDKDMVQRDIHLAIEGFYVFLH 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,417,038
Number of Sequences: 27780
Number of extensions: 412512
Number of successful extensions: 928
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)