Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_N04
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.098
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.30
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.69
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.91
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.91
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.098
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 820 PXXPPPPPAXXPPXQXPXXVXGSPPPP 900
P PPPPP PP Q P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPP-----PPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPAXXPPXQXPXXVXGSP--PPP 900
P P PPPP + PP P G P PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPAXXPPXQXPXXVXGSPPPP 900
P P P PPPP+ P P +PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP---MPAGPPSAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 830 PXPPPPGXPPXXNPXSLXGPXPPPS 904
P PPP PP P P PPPS
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPS 1214
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +2
Query: 803 PXXXPXLXXPXPPPP--GXPPXXNPXSLXGPXPPPS 904
P P + P P P G PP P + P PPPS
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 830 PXPPPPGXPPXXNPXSLXGPXPPPS 904
P P P G PP P P P PS
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPS 1108
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 830 PXPPPPGXPPXXNPXSLXGPXPPPS 904
P P P G PP P P P PS
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPS 1175
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 830 PXPPPPGXPPXXNPXSLXGPXPPPS 904
P P P G PP P P P PS
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPS 1137
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 830 PXPPPPGXPPXXNPXSLXGPXPPPS 904
P P P G PP P P P PS
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPS 1156
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 830 PXPPPPGXPPXXNPXSLXGPXPPPS 904
P PPP PP P + P P P+
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPT 1233
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 814 PXPXXPPPPPAXXPP-XQXPXXVXGSPPPP 900
P P PPP PA PP + S PPP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 814 PXPXXPPPPPAXXPPXQXPXXVXGSPP 894
P P PP P+ PP P SPP
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.91
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 829 PPPPPAXXPPXQXPXXVXGSPPPP 900
PPPPPA P P + PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 814 PXPXXPPPPPAXXP-PXQXPXXVXGSPPPP 900
P P P PA P P P + G PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 29.1 bits (62), Expect = 0.91
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +1
Query: 802 PXXXPXPXXPPPP-PAXXPPXQXPXXVXG-SPPPP 900
P P P PP P PP P V G PPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPAXXPPXQXPXXVXGSPPPP 900
P P P P PA P + G PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPAXXPPXQXPXXVXGSPPPP 900
P P P PPP PP PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +2
Query: 803 PXXXPXLXXPXPPPPGXPPXXNPXSLXGPXPPPS 904
P P + P PPPP P P PPP+
Sbjct: 752 PPPAPIMGGPPPPPP-PPGVAGAGPPPPPPPPPA 784
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPAXXPPXQXPXXVXGSPPP 897
P P PP P+ PP + P +PPP
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPAXXPPXQXPXXVXGSPPPP 900
P P PP P PP P G+P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 814 PXPXXPPPPPAXXPP 858
P P PPPPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 23.0 bits (47), Expect(2) = 3.5
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = +1
Query: 829 PPPPPAXXPPXQXPXXVXGSPPPP 900
P PP P P PPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244
Score = 22.2 bits (45), Expect(2) = 3.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 802 PXXXPXPXXPPPPPA 846
P P PPPPPA
Sbjct: 184 PSDYNPPPPPPPPPA 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,897
Number of Sequences: 5004
Number of extensions: 13149
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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