Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_N03
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 54 3e-08
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 45 1e-05
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 44 3e-05
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 43 7e-05
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 42 2e-04
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 40 5e-04
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 40 6e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 9e-04
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 39 9e-04
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 36 0.006
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 36 0.006
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 36 0.011
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 35 0.018
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 34 0.024
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 33 0.042
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 33 0.042
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 33 0.056
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.074
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.23
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 31 0.23
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.23
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.30
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 30 0.39
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.52
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 29 0.69
SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T... 28 2.1
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 3.7
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 4.9
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 4.9
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 26 6.4
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 26 8.5
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 54.0 bits (124), Expect = 3e-08
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +2
Query: 380 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCRRIL 514
+CPIC E L P +T CGH YC +CL LK K CPTCR+ L
Sbjct: 84 ECPICTEAL-QRPF-TTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 428 TKCGHVYCLKCLERCLKTEKKCPTCRRILKGNYAYH 535
T CGH+YC CLE LK CP C+ L N AY+
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYY 1140
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +2
Query: 380 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKK-------CPTCRRILKGNYAYHP 538
+CPICC E NPL C H C CL ++ +K+ C TCR+ Y P
Sbjct: 876 ECPICCNEPIQNPLL-LNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKP 934
Query: 539 LFLGNS 556
F+ N+
Sbjct: 935 FFVKNN 940
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 42.7 bits (96), Expect = 7e-05
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 344 RKPIIESSIKFGD--CPICCEELGTNPLASTKCGHVYCLKCLERCLKT---EKKCPTCRR 508
+K ++ SS + D C IC + L+ T CGH++C C+ L T +KCP CRR
Sbjct: 191 KKQVVPSSQRLADYKCVICLDS--PENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
Query: 509 ILKGN 523
+ N
Sbjct: 249 KVHPN 253
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 347 KPIIESSIKFGDCPICCEELGTNP-LASTK--CGHVYCLKCLERCLKTEKKCPTCRR 508
+P+ + CPIC +++ N +TK CGH++ CL++ L+ CP CR+
Sbjct: 95 EPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRK 151
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 353 IIESSIKFGDCPICCEELGTNPLAS--TKCGHVYCLKCLERCLKT 481
+ S + CP C EE P+A+ ++CGHVYC CL R ++T
Sbjct: 204 LCSSDFQLAACPFCLEE---KPVAARMSRCGHVYCFSCLLRFVET 245
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 380 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCR 505
+C IC L +P+ S CGH +C CL + L +CPTCR
Sbjct: 168 ECQICFGML-YDPVVSP-CGHTFCGPCLMQALTQSPQCPTCR 207
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 39.1 bits (87), Expect = 9e-04
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 383 CPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCR 505
C +C E + A+T+CGH++C C+ + +CP CR
Sbjct: 256 CSLCMEFIHCP--AATECGHIFCWSCINGWTSKKSECPLCR 294
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 39.1 bits (87), Expect = 9e-04
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Frame = +2
Query: 383 CPICCEELGTNP------LASTKCGHVYCLKCLERCLKTEKK 490
CP C E LGT+ L +TKCGHVYC C + LKT K+
Sbjct: 189 CPRCQEPLGTSKSKEKSALWATKCGHVYCGSC-AKVLKTSKR 229
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 383 CPICCEELGTNPLASTKCGHVYCLKCLERCLKT-EKKCPTCRR 508
C +C E + + S CGH +C +C+++ ++T +++CP C R
Sbjct: 627 CSVCNFERWKDRIISL-CGHGFCYQCIQKRIETRQRRCPICGR 668
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 434 CGHVYCLKCLERCLKTEKKCPTCRRILKGN 523
CGH+ CL L+ ++ CP CRR + GN
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSVIGN 357
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 353 IIESSIKFGDCPICCEEL-GTNPLASTKCGHVYCLKCL 463
++E I+ C +C +E GT+ T+CGHV C CL
Sbjct: 164 LLEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCL 201
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 34.7 bits (76), Expect = 0.018
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 389 ICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCR 505
+ C E PL T C H +C C+ L+ CP CR
Sbjct: 30 LICHEYFRAPLI-TSCSHTFCSFCIRDYLREHPMCPACR 67
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.024
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 383 CPICCEELGTNPLAS---TKCGHVYCLKCLERCLKTEKKCPT--CRRILKGNYAYHPLFL 547
C C EL ++ S KCGH++C C + K CP CR+ + + + PL+L
Sbjct: 147 CAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIF-PLYL 205
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.5 bits (73), Expect = 0.042
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 380 DCPICCEEL--GTNPLASTKCGHVYCLKCLERCLKTEKKCPTCRRIL 514
+CPIC E + + C H +C E ++T +CPTC + +
Sbjct: 270 NCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTI 316
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 33.5 bits (73), Expect = 0.042
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +2
Query: 383 CPICCEELGTNP----LASTKCGHVYCLKCLERCLKT-EKKCPT--CRRILK 517
CP+C + NP L + +C H C C++R T +CPT C +IL+
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 33.1 bits (72), Expect = 0.056
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 377 GDCPICCEELGTNPLASTKCGHVYCLKCLERCL 475
G C IC +E G P S +C H +CL C + L
Sbjct: 129 GTCEICYDE-GCLPFFSAECDHEFCLACYRQYL 160
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 32.7 bits (71), Expect = 0.074
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Frame = +2
Query: 380 DCPIC--CEELGTNPLA-----STKCGHVYCLKCLERCLK--TEKKCPTCRRILK 517
+C +C C + G +A +T CGH YC C+ LK CP C+ ++
Sbjct: 188 ECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRIR 242
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 428 TKCGHVYCLKCLERCLKTEKKCPTCR 505
T C H+Y +CL + ++T CP CR
Sbjct: 645 TPCHHLYHRQCLLQWMETRSICPVCR 670
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 395 CEELGTNPLASTKCGHVYCLKCLERC-LKTEKKCPTCRR 508
C++L N + C ++C +C++ L ++ +CP C R
Sbjct: 285 CKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHR 323
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 LRKPIIESSIKFGDCPICCEELGTNP-LASTKCGHVYCLKCLERCLKTEKKCPTCR 505
++KP E + G+C IC E N + C H + C++ L+ C CR
Sbjct: 382 VQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 30.7 bits (66), Expect = 0.30
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 380 DCPICCEELGTNPLASTKCGH-VYCLKCLERCLKTEKKCPTCRRILK-GNYAYHPLFLGN 553
DC IC ++ G S CGH + C+ R + CP C+R + Y +H L
Sbjct: 20 DCVICLQKDGLRAQLS-PCGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYGFHGSSLYK 78
Query: 554 S*YYNSL 574
Y SL
Sbjct: 79 KWYTQSL 85
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 419 LASTKCGHVYCLKCLERCLKTEKKCPTCR 505
+A CGH + CLE + CP CR
Sbjct: 51 IAKIPCGHYFHNHCLESWCRVANTCPLCR 79
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 380 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKK-CPTCR 505
+C IC + P+ C HV+CL CL K + CP CR
Sbjct: 359 ECAIC-SNVAYKPVR-LGCSHVFCLHCLIILQKQKVDFCPLCR 399
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 29.5 bits (63), Expect = 0.69
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 GDCPICCEELGTNPLASTKCGHVYCLKCLERCLKT---EKKCPTCRR 508
G CP C P+ KC H++ C++ L T + +CP R+
Sbjct: 33 GCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQ 79
>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 68
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 155 IIELDEESYIQNETSLLNVDSSLETTSINNIYSIDD 262
I E+DEE + NE+ L V + LE N Y +++
Sbjct: 33 IEEIDEERLLVNESRLEQVKAELERRLEENTYQVEE 68
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 20 LTISGTSLKILRILLKKQSTMSFRDEIIDLTDSFTLANHCALADFIIELDEES 178
+T + + +I +K+ M + IID T NH A +I++ D++S
Sbjct: 869 ITFANRREALNKITDRKRKKMKTNETIIDHTTRKKKENHLRSAKYIVDSDDDS 921
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 446 YCLKCLERCLKTEKKCPTCRRILKGNYAYHPLFLGN 553
YCLKC + C C+R + Y +H + GN
Sbjct: 401 YCLKCFQVKPPRSYHCGACKRCI-NRYDHHCPWTGN 435
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 434 CGHVYCLKCLERCLKTE-KKCPTC 502
CGH +C C+E + + CP C
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQC 678
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 578 ILDYYNITNFPKIEDDMHNSLSI 510
+LD Y+I+N PK E ++ LSI
Sbjct: 292 LLDQYSISNIPKDESKRNSHLSI 314
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 434 CGHVYCLKCLERCLKTEKKCPTCRR 508
C H + C+ R L T CP R
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNR 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,900
Number of Sequences: 5004
Number of extensions: 54267
Number of successful extensions: 170
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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