Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_N02
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 629 PXXXAPPPXXXXPXAPXXXPPPPPAPXP 546
           P    PPP    P      PPPPP P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 617 APPPXXXXPXAPXXXPPPPPAPXP 546
           AP P    P AP    PPPP P P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 614 PPPXXXXPX-APXXXPPPPPAP 552
           PPP    P  AP   P PPPAP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAP 756



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 614 PPPXXXXPXAPXXXPPPPPA 555
           PPP       P   PPPPPA
Sbjct: 765 PPPPGVAGAGPPPPPPPPPA 784


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 629 PXXXAPPPXXXXPXAPXXXPPPPPAP 552
           P    PPP       P   PPPPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 572 PPPPPAPXP 546
           PPPPP P P
Sbjct: 945 PPPPPPPPP 953



 Score = 22.2 bits (45), Expect(2) = 3.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 584 PXXXPPPPPAP 552
           P   PPPPP P
Sbjct: 942 PAFPPPPPPPP 952


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 572 PPPPPAPXPXA 540
           PPPPPAP P A
Sbjct: 6   PPPPPAPAPAA 16


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = -3

Query: 617 APPPXXXXPXAPXXXPP---PPPAPXP 546
           APP     P AP   P    PPPAP P
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 971,135
Number of Sequences: 5004
Number of extensions: 8802
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)