Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M24
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.9  
10_02_0068 + 4888273-4889266,4889375-4889397                           28   8.6  
03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328     28   8.6  

>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 164 GTGRGSGAQRRAASHSIRAPGPR-RENATVPEDKF 63
           G GRGSGA+R   + ++ AP P+ R  A  P   F
Sbjct: 468 GRGRGSGAKRAPTAVTVGAPPPQARTPAAAPAKAF 502


>10_02_0068 + 4888273-4889266,4889375-4889397
          Length = 338

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 79  TVAFSRRGPGARIEWDAAR-RCAPLPRPVPLIVRAGCRQDVTFHVV 213
           TVA  +R P  RI       +C  +  P P   + GC  D+ F V+
Sbjct: 27  TVAVDQRSPRRRIALPGCPDKCGDISIPYPFGTKEGCYLDINFIVL 72


>03_02_0854 - 11789850-11790524,11790602-11791063,11793119-11793328
          Length = 448

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 761 GRCSCNCERKSRLGFRKNVNI 823
           G   C CE  + LG RKNVN+
Sbjct: 144 GLVRCRCENSAMLGERKNVNL 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,989,388
Number of Sequences: 37544
Number of extensions: 486322
Number of successful extensions: 1409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)