Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M24
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    29   3.4  
AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical ...    29   4.4  
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    29   5.9  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        29   5.9  

>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 722 KQLYFVYIDIAVGGRCSCN 778
           +  Y+   D AVGGRC CN
Sbjct: 257 RSYYYAISDFAVGGRCKCN 275


>AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical
           protein Y57A10C.11 protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  SSGTVAFSRRGPGARIEWDAARR 138
           +S ++ FSR+ PG R++WD  ++
Sbjct: 217 NSNSIHFSRQHPGTRLKWDGMKK 239


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 722 KQLYFVYI-DIAVGGRCSCN 778
           KQ YF  + ++AVGGRC CN
Sbjct: 275 KQRYFYSMGELAVGGRCKCN 294


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 722 KQLYFVYI-DIAVGGRCSCN 778
           KQ YF  + ++AVGGRC CN
Sbjct: 275 KQRYFYSMGELAVGGRCKCN 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,176,221
Number of Sequences: 27780
Number of extensions: 400700
Number of successful extensions: 1016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)