Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_M24
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   2.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 864 FDPPAELIXYLLHPIFTFLRNPKRDFRSQLHEHLP 760
           ++ P E   Y  HP    LR  + D+  +LH++ P
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSP 125


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 677 ANVCRRDRNTYKSNQKQLYFVYIDI 751
           +N    + N YK+  K+LY+  I+I
Sbjct: 319 SNKTIHNNNNYKNYNKKLYYNIINI 343


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 639 STIVKISLMFFMKNIFIDSY 580
           +TIV  S+M F+  +FI  +
Sbjct: 567 ATIVNYSIMIFLSAVFISFF 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,939
Number of Sequences: 438
Number of extensions: 4748
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)