Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_M23
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 178 7e-46
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 57 3e-09
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 50 6e-07
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 45 2e-05
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 3.6
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 4.7
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 8.2
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 178 bits (434), Expect = 7e-46
Identities = 81/87 (93%), Positives = 85/87 (97%)
Frame = +2
Query: 221 YAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDIT 400
YA+ALREVSAAREEVPGRRG+PGYMYTDL+TIYERAGRVEGRNGSITQIPILTMPNDDIT
Sbjct: 281 YADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDIT 340
Query: 401 HPIPDLTGYITEGQIYVDRQLHNRQIY 481
HPIPDLTGYITEGQI+VDRQLHN IY
Sbjct: 341 HPIPDLTGYITEGQIFVDRQLHNNAIY 367
Score = 100 bits (240), Expect = 2e-22
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = +1
Query: 52 DFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQCEKHVLVILTDMSS 219
DFEENGS E V LFLNLANDPTIERIITPRLAL+A+EFLAYQ EKHVL ILTDM+S
Sbjct: 225 DFEENGSFERVTLFLNLANDPTIERIITPRLALSASEFLAYQTEKHVLTILTDMTS 280
Score = 93.5 bits (222), Expect = 4e-20
Identities = 45/63 (71%), Positives = 51/63 (80%)
Frame = +3
Query: 510 SRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTNS 689
SRLMKSAIGEGMTR DH DVSNQLYA YAIG+D +MK+VVGEEAL+ +D L LEFL
Sbjct: 377 SRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKF 436
Query: 690 RRT 698
+T
Sbjct: 437 EKT 439
Score = 56.8 bits (131), Expect = 4e-09
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +1
Query: 709 GYYENRTVFESLDIGWQLLRIFPKEMLKRIP 801
G YENRT+FE+LD+ W LLRIFP+EML RIP
Sbjct: 444 GAYENRTIFETLDLAWSLLRIFPREMLTRIP 474
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 57.2 bits (132), Expect = 3e-09
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTM 382
R+AEALRE+S E+P G+P Y+ LA+ YERAGR R G+++ + ++
Sbjct: 361 RWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSP 420
Query: 383 PNDDITHPIPDLTGYITEGQIYVDRQLHNRQ 475
P D + P+ T I + +D++L R+
Sbjct: 421 PGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 451
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 49.6 bits (113), Expect = 6e-07
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNG--SITQIPILTMPND 391
+ A A R++S PGR +PG ++ + + ERA ++ ++G S+T +P++
Sbjct: 301 KQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIETQGG 360
Query: 392 DITHPIPDLTGYITEGQIYVDRQL 463
D++ IP IT+GQI+++ +L
Sbjct: 361 DVSAYIPTNVISITDGQIFLESEL 384
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 44.8 bits (101), Expect = 2e-05
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = +2
Query: 218 RYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 397
R+ +A EVSA +P G+ + TD+ + ER + GSIT + + +P DD+
Sbjct: 306 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTT--KKGSITSVQAVYVPADDL 363
Query: 398 THPIPDLTGYITEGQIYVDRQLHNRQIY 481
T P P T + + R + IY
Sbjct: 364 TDPAPATTFAHLDATTVLSRSISELGIY 391
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 138 RCNNSLDGRIIGQVQEETHVLHGTVLFKVLKILRN 34
RC NSLD +G + + GT+L K + +R+
Sbjct: 297 RCGNSLDDEDLGGLTPARKLNKGTILAKATEYIRH 331
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 555 DHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLT 683
+HS++ + C A+G DV +AVV +AL ++ L E LT
Sbjct: 801 EHSNLKEAVL-CLALGADVNYQRAVV--KALLKNNYLIAELLT 840
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 662 QIVGRQSLLTYHGLHGLHVLADSVARVQLVGNVGVILPRHAL 537
+I+GR++L+ Y LH DSVAR + +V +LP L
Sbjct: 439 KIIGREALMIYRALHDWR---DSVARKE-DESVRYVLPNRLL 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,174
Number of Sequences: 5004
Number of extensions: 69840
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -